RNA id: TU428847



Basic Information


Item Value
RNA id TU428847
length 357
lncRNA type intronic
GC content 0.50
exon number 3
gene id G377293
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21147331 ~ 21151990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatactggtcctctgtcagtcgggttgttactgggtactggtcctctgtcagtggggttgttactggatactggtcctctgtcagtcgggttgttactggatactggtcccctgtcagtggggttgttactggatactggtcctctgtcagtggggttgttactggatactggtcctctgtcagtcgggttgttattgatactggtcctctgtcagtcgggttgttattgatactggtcctctgtcagtggggttgttattggatactggtcctctgtcagtggggttgttattgatactggtcctctgtcagtggggttgttattggatactggtcctctgtcagtggggttgtta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU428844 lncRNA upstream 21790 21112894 ~ 21125541 (+) True G377292
TU428805 lncRNA upstream 44231 21100331 ~ 21103100 (+) True G377255
TU428824 lncRNA upstream 75749 21071374 ~ 21071582 (+) True G377272
TU428812 lncRNA upstream 103335 21043689 ~ 21043996 (+) True G377261
TU428798 lncRNA upstream 112815 21033942 ~ 21034516 (+) True G377251
TU428849 lncRNA downstream 424 21152414 ~ 21153105 (+) True G377294
TU428819 lncRNA downstream 7141 21159131 ~ 21160092 (+) False LOC110523400
TU428820 lncRNA downstream 7141 21159131 ~ 21160149 (+) True LOC110523400
TU428854 lncRNA downstream 8809 21160799 ~ 21161204 (+) True G377299
TU428856 lncRNA downstream 10464 21162454 ~ 21162971 (+) True G377301
XM_036977026.1 mRNA upstream 48042 21050936 ~ 21099289 (+) True LOC110522819
XM_021602064.2 mRNA upstream 155955 20952149 ~ 20991376 (+) False LOC110523398
XM_021602063.2 mRNA upstream 155990 20952149 ~ 20991341 (+) False LOC110523398
XM_021602076.2 mRNA downstream 125578 21277568 ~ 21288531 (+) True npm2b
XM_021602081.2 mRNA downstream 321863 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 326695 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA downstream 326710 21478700 ~ 21493435 (+) True LOC110523407
XM_021602086.2 mRNA downstream 366567 21518557 ~ 21521828 (+) True LOC110523409
TU428679 other upstream 310772 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 388830 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 550468 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1163483 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 3063966 18067443 ~ 18083365 (+) True arhgef28a
TU430417 other downstream 1020545 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1020545 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1351762 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1450120 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1790302 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile