RNA id: TU428927


Basic Information

Item Value
RNA id TU428927
length 3985
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G377363
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21315677 ~ 21415826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTATATAAGCAGTCCAACACATATGCTCTACCTGTCTTGGAAACAAAACAAAATTCATTAAGACAAAATAATTTTTATAACTATTATTGAATAACATTATCAATAATGATCATTGTCGTCATAATCTCAATCTTAAGAGTAACCCAAAGCCAGTAGTATTTGTGGTACATGTAAAAGAGTGATGTGTGTGGAGCAGTTTTCTACAGCGAGACGTCTGGTGTGAGCTCGTAGACAGGAGGCGCCATTTCCCCAAAACACAATAAATATGAAAGAGCAAGAGTCTGGTATTCAAACAAAAATAATCATCTGGTAACTCGCAGGTTCAATAGCTAAAGTCTTTATGTGCAAGATCCGAGCCAATGTCTTCACCACAAACAGATAATATACATCAAAATCCCAACCCTTCCCCTGCCCATCGTCATCTGAACAGAAATCTACATCGTTACATCTTTTTAAATAATCCTAGAGCATTTCTCATTTCATATAcacatatattcatatatatactTGAATTTGTTAGTTTTTATCCTTACTATATGCCATCCTCTTTCAATATCTAGCGCGCGTTTGACAAAAAACATCTCCACTAAATAAACATACTGACAAGCGATTGAAggcagcacgcacacacaccaattgAACCCATTACAACCCAGCCCTGTGTGTGACAGGTAAAGGTGCCAAAAGTCAGACTCACTCCATGCTAGGACAGAGAAACACCTCTCCTCACACTCTGCTCCACAGCACCAGTTGTTCGTTTTGTACCCTTTAAAAGACACACATTCCTCAGATTcaggggttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggccaaaggCTGGTGCTGTGAGGGGTCAAAGTTGAGAGAGGAGAATTCATTGGTCCAGAACAGTCAGCCAAACAGCAACAGGTATTTGGCACATTGAACATCAAGTAAGTAACACATTGGCTTAAAAAGGTGCTACAaagtcatttcaacaaaaactaAACCCATTCATTTGGTTTAAAAACAATTAAAAGACACCATGAAAGGTGACCGGTATCTCTAAAACAACATCACTTCCCTCTGACTTGTAAAGGCTACTAAGAATATCCCCCCCAGCCCCACATGCAGGTCACAGCTGAGGAAATGCATGGTTATAACAGACAAGGAACATTGTACTGCATGAAAAAACAAAACCCTGAAATTACAATTGAGTGAACAAATTGtttcacctcttcctcctctctctttttcgaAAACATCTCCCAGCTGTGCGTTCATGTCATTCAGTTAAACATGTCATGACTCCAGCCTGCAGCACAGCTGGTTCTCCTAAAACTGTGAAACATAAAGCTGCATTCTGGGTCACAATCAGAAATCATTTATAGGAAAGTTCAAACCAGCCTGAAGTGAACTAACTGATGGTTTGTGGAGTCAACAAcctaacacctctctctctctgcactgacgTCCCTATACAACCattcctgtgtgtctgtctgtaaatCTGCATCTGGATGGCTGCAAGACTATGGCATACACACAAATTAGGACTGCCCTGATACAATCGCACAGTATTTGGCCCTCAGAGGTTCACAGATGCATGcacgtgcgcgcgcacacacacccactgagGTATGCACACTGCCAGTTGATTGAAAGCTGTcagacccccccctccccacatgcccatagagaagaggacagacagacatgtattgtagagtagtactgttttatacaggagatacagagAAGGACTTGGGCTATATACACATACTGTGGCCCATAAAGATCGCTAGTCAGTCAGTAGATCCCTCCTCCATCTATGTCTCTGTCGGATTGACGGTGTGTCCTTCATACACACCATCCCCTGTTCCTATAGTTACGAGTACAAGCGTTCCCCGGTCTCCATGGTTACCAGCAGCTGTACAGGAGCCAATCGGGGAAGTTTGTCCATGGTCACAAGAGTTCCGTGCCAGTGAGATCTGTATCCGAGGGCGATGCCTGCTTTCAAACGGGTCCTCCTGGGTGCTCAGGTGACTCAAGTAAATATTGACGTTGGCACATTATGCACttcaatgatggagggagggaggacatgaACAAAGGGTAAAAGTCTCTTCCAAATTCAAAGCagctttcttcctctcctttttCATTCTCTGTTGAAGGAATAACAACCTGCTTCCACCTCTATGCACACACACGGACAatagcatatacacacacacacacacaatagcatacacacacacacggacaatagcatacacacacacacggacaatagcatatacacacacacacacacacacacacacagggacaataGCATACACACACGGACaatagcatacacacacacacggacaatagcatacacacggacacacacacacacacatacagggacaatagcatacacacacacacacacacacacacacacacacagggacaataGCATACACACGGACAATAGCATACACACGGACAATAGCATACACACGGACaatagcatacacacacacacacacagggacaatagcatacacacacacagggacaatagcatacacacacacacacagggacaatagcgttcacgcgcacacacacacgcacacacagggagaaaagcgtacacacacacgcacgcacacacacacagggacaatagcgtacacacacagcaacacacagggACAATAACGTACACACACAGCAACAAtagcatacacacacagcaacaatagcaTACACACACAGCAACAAtagcatacacacacagcaacaatagcgtacacacagcaacacacagggACAATAgcgtacacacacaacacacagggaCAATAGcgtacacacacagcaacacacagggacaatagcatacacacacacagcaacacacagggaaaataatgtacacacacacagcaacacacagggACAGTAGCGTACACACAGGGACAATAGCGTACACACAGGGACAATAGCGTACACACAGGGACAATAGCGTACACACAGGGACAATAACGTACACACAGGGACAATAACGTACACACAGGGACAATAGCGTACACACAGGGACAATAGCGTACACACAGGGACAATAGCGTACACACAGGGACAATAGCATACACACAGGGACAataacgtacacacacactgcaacacacacagttCATTGCCATTCTCTTGGTATGTCCCAGCAGGTCTATGCTCCTTCTgcttttctctcctcccctccgtaTGAGCCCACAGGAGAGAAATGTCATTGGTCCAGCCCCCTCTCTCCAAGCGATGCCATTGGTCCAGATCTTCACCTCCTGCTTTAGGTCCTGCCCCTACACTACAGTCAGATAATCCTGTGGAGAGtggctggcaggtgtgtgtggCTCAGGTCCAGTCTCAAGACGAGGCTGGGGAATGAGGGAGACAAGGAGAAGAGGGGCCCTAGTCTTCAGTCTCCTACTCCAGGGCTGCTTTCTGCTGCTCTGCCAGGATGACTGGGTGGAATGCCAGTGCATTGGGGTGAGAGGAGTGTGTCATCATTGAGAGGGTCTACCCCGAGGCTacagtgagagatggaggagagaaaaCACTCTGGACCTCTTTAGGTACATGCACATCTCTTTCCCTTCATCCCAGGGTCCCATGGTACGCTTTGGCTTTCAGAGGAGAGAGGCTGCCGGCTTGGTCCATACACACTCCAGGGCGAGAGTGCGGGGtgttactgtatgtttgtgtgtgtgtgtctagggctGGGGGGGCGGGGTCATAGGGGATGAGGTTATaagatgcagtgtgtgtgtgtgtgcaggtgtgtagCCTACAGGCCGTTGCTGTTGTGGTGTGTGAGGGGAGGTTTGGAGAGCTCCACCCCCCCAGCCCGTCCCTTCCCAATGACCTTAGGAGCGCGACGCAGCAGCTTCTGGGCCTCAGTGAACGCCTCGGTCAGCTCCTTCTTCCACTGGACAAACTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428953 lncRNA upstream 28803 21327393 ~ 21329058 (+) True G377381
TU428948 lncRNA upstream 37653 21318805 ~ 21320208 (+) True G377377
TU428942 lncRNA upstream 42777 21314641 ~ 21315084 (+) True G377371
TU428923 lncRNA upstream 51587 21305662 ~ 21306274 (+) True G377360
TU428919 lncRNA upstream 63267 21293402 ~ 21294594 (+) True G377356
TU428935 lncRNA downstream 9215 21371266 ~ 21373709 (+) True G377364
TU428985 lncRNA downstream 17535 21379586 ~ 21380147 (+) True G377405
TU428997 lncRNA downstream 34650 21396701 ~ 21397114 (+) True G377416
TU429037 lncRNA downstream 88416 21450467 ~ 21455436 (+) True G377455
TU429077 lncRNA downstream 155694 21517745 ~ 21518246 (+) True G377494
XM_021602076.2 mRNA upstream 69330 21277568 ~ 21288531 (+) True npm2b
XM_021602067.2 mRNA upstream 197721 21108129 ~ 21160140 (+) False LOC110523400
XM_036977026.1 mRNA upstream 258572 21050936 ~ 21099289 (+) True LOC110522819
XM_021602062.2 mRNA upstream 375458 20952150 ~ 20982403 (+) False LOC110523398
XM_021602081.2 mRNA downstream 111802 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 116634 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA downstream 116649 21478700 ~ 21493435 (+) True LOC110523407
XM_021602086.2 mRNA downstream 156506 21518557 ~ 21521828 (+) True LOC110523409
XM_021602084.2 mRNA downstream 165504 21527555 ~ 21534161 (+) True LOC110523408
TU428818 other upstream 198942 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 521302 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 599360 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 760998 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1374013 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 810484 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 810484 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1141701 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1240059 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1580241 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile