RNA id: TCONS_00031418


Basic Information

Item Value
RNA id TCONS_00031418
length 2533
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_015804
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42708674 ~ 42713902 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCTTTCAGTTTGTGCTGTAAAAAATGGCAGAATCCAGTGTTTGTTTGGCTCAGGAACAGTTCAGCTGTTCAATCTGTCTGGATCTACTGAAGGATTCAGTGGCCATTCCCTGTGGACACAGTTACTGCATGAGCTGTATTTCAGACTGCTGGGATCAGGATGAGCGGAAAGGAGTCTACAGCTGCCCTCAGTGCAGACAGTCCTTCACTCCAAGACCTGCGTTAGGAAAAAACACCATGCTGACTGAAGTGATGGAGAATATCAGGAAGAGAAAATTACAAGCTGGAGATGTGGAGTGTGACGTTTGTACTGGGAGAAAATTTAAAGCTGTCAAGTCTTGTCTGGTGTGTCTGGAATCTTACTGTCAGACTCACTTTCAACGTCATGAAGAATTTCATTCTAGAAAGCGACACAAAGTGACTGATGCCACTGGACGACTGCAGGAGATGATCTGCCCTCTACATGAGAAACTACTGGAGATTTTCTGTCGAACAGATCAGTGCTGTATTTGTTATCTGTGTACAATGGATAAACACAAAAACCACGACACTGTATCAGCTGCAGCAGAGTGGACTGACAAAAAGATTCAACTGGCTGAAATGCAAAAAACAACCCATCAGAGAATGGTGGAGAGACAGAAGGAGCGAGAGGAGCTGAGAGCAGCTGTAGAGTCTCACAAGCGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGCATCTTTACTGAGCTCATCTTCTCCTTTGAGAGAAGCTGCTCTGAGGTGACACAGCTGATCACAGATCAGCAAAAGGCTGCAGAGGGTCGAGCTGAAGAACGACTGAAGCAACTGGAACAGGAGATTGATGATCTGAGGAGAAGAAACACTGAGCTGGAGCAGCTTTCACACACAGACCATCACATCCATTTTCTCAAGAGTTTCCAGTCTCTCTCTTCTCCTCCTGGATCTACAGACTCATCCAGCATCACTGTCAGCTCTCGTATCTCTTTTGATGATGTTGGTAAATTGTCTCATCTGAGAAAGAAACTGGAGCATTTCTGCAGAGAAGAGATTGAAAAGATATCTAGTAAAGTGAGAGACATTAACATAATTTCCATCTCTGCTGAACCAAAGACTCGTCAGGAGTTCCTCCAATATTCCAGGCAGCTGACTTTtgatccaaacacagtgaataCGTCCCTGGTGTTGTCTAAAAAGAACAGAGTGATTGAATACACTGACAAAGTTCAGcagtatcctgatcatccagacagatttgattgtTGGCCTCAGGTGTTGTGTAGAGAGAGTGAGTGTGGACGCTTTTACTGGGAGGTTGAGTGGAATGGTTATATAgaaatatcagtgtcatataagagcatcagcagGAAGGGACGTGGAAATGAGTGTGTTTTTGGTTGTAAtgatcagtcctggagtttgttctgctctaGATCCAGGTTTTCATTCAGGCACAATAAACAACAGACTAAACTCCCAGTTCTGTCCATCTCCTCTAGAATAGGAGTGTATGTGGaccacagtgcaggaactctgtccTTCTACAATGTCTctgacacaatgagcctcatttACAGAGTCCACACCACATTCACTCAGCCGCTCTACCCTGGGTTTTGGGTTTTTGCTGGAAGCATCTTGTTCACAACTGACACTGTGATCTGACACTGATGTTGCAGATATTCTACAAACAACACGAACCATTAGAGATTCTCATGTCTTTTTTTATGCTAGATACTATTAACACAGCCCCCTTCTCCAACACCTTATCCCTTCCAGTTGCAAAATTAACAAATAAgcactaatgataataataacaatatggcagggaaaaaaagttttgtattttagtattttttttatgtaacatgAAATTGTGAACAACGACAAAGAAATAATACAATGTTTAGCTTGTTTTGTCTGTGTAGCCAAAACTTGCCATTTCCAAAATATATCATGGGTTTTCTATAGTACTAATTTACATAAAGTACATTGTTACTATGTTAAGAGCATAATTATGATTTGTTGAAATATTTTAGTCCTGTAATGAGTTCCtgtttttcataaaatatatgtgttttgtacagtaaataaatatatgtatgctAGCTTTGAGCAGCATTAAACAGTCAGTGTACATAAATGCCATGTCAGATTGAGCTTTTGTTTCATATTTGCAGCATGGACGAGACTTTTGTTAATACCATTTAACTGGAAACCAGTGATCTGATTGAATGAAATAATTGGTTAAAAAtaggtatttaaaataaaaacacaaagacttaaaaaattgactttaaaattgtttaaatcaaTTCAAGGGAGCAAATGTTGTCTATTAAGTAAAATCTGACCTTAATGTGAACCAAATCCTGTATTCTCTGTACATCACCGTGCATTATGGCTTTCTTTATGTTTAGCACTGCTTCCACCTGAACAGtctctataaaacaaaagaaatatcAAATATgatcaaaaaataaaacagtttgatatagtatacattaaataaatcattaacaatttTATTG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-195 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDART00000005767

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033296 lncRNA upstream 62690 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00033640 lncRNA upstream 83794 42616861 ~ 42624890 (+) True XLOC_015802
TCONS_00033638 lncRNA upstream 286040 42410888 ~ 42422644 (+) False XLOC_015798
TCONS_00033639 lncRNA upstream 286040 42419803 ~ 42422644 (+) True XLOC_015798
TCONS_00031392 lncRNA upstream 526304 42176922 ~ 42182380 (+) False XLOC_015787
TCONS_00031425 lncRNA downstream 59447 42773349 ~ 42774516 (+) False XLOC_015807
TCONS_00031426 lncRNA downstream 59482 42773384 ~ 42781254 (+) True XLOC_015807
TCONS_00033641 lncRNA downstream 259025 42972927 ~ 43010381 (+) True XLOC_015809
TCONS_00033642 lncRNA downstream 424653 43138555 ~ 43163518 (+) True XLOC_015811
TCONS_00033644 lncRNA downstream 939718 43653620 ~ 43659284 (+) False XLOC_015814
TCONS_00031415 mRNA upstream 108571 42592572 ~ 42600113 (+) False XLOC_015801
TCONS_00031416 mRNA upstream 108597 42592851 ~ 42600087 (+) True XLOC_015801
TCONS_00031412 mRNA upstream 363113 42344304 ~ 42345571 (+) True XLOC_015797
TCONS_00031411 mRNA upstream 374973 42330828 ~ 42333711 (+) True XLOC_015793
TCONS_00031410 mRNA upstream 375455 42330828 ~ 42333229 (+) False XLOC_015793
TCONS_00031419 mRNA downstream 2093 42715995 ~ 42717210 (+) False XLOC_015805
TCONS_00031420 mRNA downstream 2093 42715995 ~ 42717211 (+) False XLOC_015805
TCONS_00031421 mRNA downstream 2093 42715995 ~ 42717899 (+) False XLOC_015805
TCONS_00031422 mRNA downstream 2093 42715995 ~ 42718815 (+) False XLOC_015805
TCONS_00031423 mRNA downstream 2093 42715995 ~ 42722040 (+) True XLOC_015805
TCONS_00031414 other upstream 121649 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031413 other upstream 284885 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031377 other upstream 1672493 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031374 other upstream 2651668 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031335 other upstream 4830380 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031429 other downstream 284900 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031434 other downstream 565699 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031447 other downstream 1638771 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031458 other downstream 1850476 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031468 other downstream 2209897 44923799 ~ 44924676 (+) True XLOC_015830

Expression Profile

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