RNA id: TU428953



Basic Information


Item Value
RNA id TU428953
length 668
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id G377381
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21327393 ~ 21329058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTGTGCGATAGAGCTGCAGGGCGGGGAGGATGTGTGTAGAGTGTAGCTGGATCCTGAGAGCAGGGACGTCGAATCCTCCACCACTGCTGTCTGTCTTAGCACCCACACACTGCAGGAACACTGGCCTGGCTCGACGAATCAGATTCAATAGAGCATCCTGGAAAGGGGGGTGGCGTGTATTAGGGTAGTTATGGCCTGTAGTTTGACTGATATACAGTGGGAGTGTGTTTTAGGGTACTTATGGCCTGAAGTTTGACTGATTATAAAGTGGGAGTGTGTATTAGGGTACTTATGGCCTGTAGTTTGACTGATATACAGTGGAAGTGTGTTTTAGGGTTTTTACGGCCTGTAGTTTGACTGATATACAGTGGGAGTGTGTATTAGGGTTTTTACGGCCTGTAGTTTGACTGATATACAGTGGGAGTGTGTATTAGGGGACTTACGGCCTGTAGTTTAACTGATATACAGTGGGAGTGTCGGCGTATGGCGGCCATTCCTCCGCTGAAGGTCTTTCTGACGGTGCCACTCCTCTGTAGCGAACGCTGGCtgcccccctccacccctcccaaaCCACGACACAGAGGGGGCACAGAGGCACGGGGGCCGAATAACGCCTTCACTACCCCActggaaatggagagagagaaaaagaggtagaggggtaaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU428948 lncRNA upstream 7185 21318805 ~ 21320208 (+) True G377377
TU428942 lncRNA upstream 12309 21314641 ~ 21315084 (+) True G377371
TU428923 lncRNA upstream 21119 21305662 ~ 21306274 (+) True G377360
TU428919 lncRNA upstream 32799 21293402 ~ 21294594 (+) True G377356
TU428879 lncRNA upstream 123777 21203322 ~ 21203616 (+) True G377322
TU428927 lncRNA downstream 28803 21357861 ~ 21362051 (+) False G377363
TU428928 lncRNA downstream 28803 21357861 ~ 21362051 (+) False G377363
TU428931 lncRNA downstream 28803 21357861 ~ 21415826 (+) False G377363
TU428932 lncRNA downstream 28803 21357861 ~ 21362051 (+) False G377363
TU428933 lncRNA downstream 28803 21357861 ~ 21362051 (+) False G377363
XM_021602076.2 mRNA upstream 38862 21277568 ~ 21288531 (+) True npm2b
XM_021602067.2 mRNA upstream 167253 21108129 ~ 21160140 (+) False LOC110523400
XM_036977026.1 mRNA upstream 228104 21050936 ~ 21099289 (+) True LOC110522819
XM_021602062.2 mRNA upstream 344990 20952150 ~ 20982403 (+) False LOC110523398
XM_021602081.2 mRNA downstream 144795 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 149627 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA downstream 149642 21478700 ~ 21493435 (+) True LOC110523407
XM_021602086.2 mRNA downstream 189499 21518557 ~ 21521828 (+) True LOC110523409
XM_021602084.2 mRNA downstream 198497 21527555 ~ 21534161 (+) True LOC110523408
TU428818 other upstream 168474 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 490834 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 568892 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 730530 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1343545 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 843477 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 843477 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1174694 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1273052 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1613234 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile