RNA id: TU428935


Basic Information

Item Value
RNA id TU428935
length 2151
lncRNA type read_through
GC content 0.49
exon number 3
gene id G377364
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21371266 ~ 21373709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCGTGGAGACGTGCGTCGCGTGCGTGGAGACGTGCGTCGCGTGCGTGGAGACGTGCGTCGCGTGCGTGGAGACGTGCGTCGCGTGCGTGGAGACGTGCGTCGCGTGCGTGGAGACGTGCGTCGCGTGCGTGGAGACGTGCGTCGTGTGTGTCCTCACCCTCCTCGTGGCCCAGCTGTTTGTTCTTGGCCCTCTTGCGGGCCTCGTTCTTGTCCGTGTCGGAGTTGACCGCCTCGTACACCGTCTCAGCCACCTCCTGCTGCCAGCGCTCTGAGATGACCAGCGGGAAGTTCTTATACAACTCCTGGTCACTGTCCAAcaactggagagagggagagaggtgaaaggggagagggagaggagagaaagagggagagaggtgaaaggggagaggaagaggagagaaagagggagagaggtgaaaggggagaggaagaggagagaaagagggagagaggtgaaaggggagaggaagaggagagaaagagaggtgaaaggggagaggaagaggagagaaagaggtgaaaggggagaggaagaggagagaaagagggagagaaacgaCACAGCTATGAGTTGGAAGGCTAAGTGAAGTAATACCTGAGAACCACGTCACCAGTCCTTGTGAGACCAGCTAAGCTGTGCAGCACCACTGTAATTAAGGCAGCCTGGAACACTCCCAACGTTCCTAATACTGTTGTGTAATGCTAAACCTCTGTTGGAAGGACTTTCTCTCTGAACACTGATAGAGTCACGTTACACCTCAGGCtccgtgtgtgtgagcatgtgtgagcGTTGCAGTATGATGTAGGTGAGTGTGTATATCAGGATCAGCGGTTATATAATGCTGTGGATTTGACTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAGATAAGAGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACATTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATGCCCTTGGTGTTTCTTGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATACCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATACCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATACCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATGCCCTTGGTGTTTCATGAgataagggttgtgtgtgtgttggagctttACCTTGATGCCCTTGGTGTTTCATGAGATAAGGGTTGTGTGTGTTGGAGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428929 lncRNA upstream 9215 21315677 ~ 21362051 (+) False G377363
TU428930 lncRNA upstream 9215 21315677 ~ 21362051 (+) False G377363
TU428927 lncRNA upstream 9215 21357861 ~ 21362051 (+) False G377363
TU428928 lncRNA upstream 9215 21357861 ~ 21362051 (+) False G377363
TU428932 lncRNA upstream 9215 21357861 ~ 21362051 (+) False G377363
TU428985 lncRNA downstream 5877 21379586 ~ 21380147 (+) True G377405
TU428997 lncRNA downstream 22992 21396701 ~ 21397114 (+) True G377416
TU429037 lncRNA downstream 76758 21450467 ~ 21455436 (+) True G377455
TU429077 lncRNA downstream 144036 21517745 ~ 21518246 (+) True G377494
TU429096 lncRNA downstream 176628 21550337 ~ 21550561 (+) True G377505
XM_021602076.2 mRNA upstream 82735 21277568 ~ 21288531 (+) True npm2b
XM_021602067.2 mRNA upstream 211126 21108129 ~ 21160140 (+) False LOC110523400
XM_036977026.1 mRNA upstream 271977 21050936 ~ 21099289 (+) True LOC110522819
XM_021602062.2 mRNA upstream 388863 20952150 ~ 20982403 (+) False LOC110523398
XM_021602081.2 mRNA downstream 100144 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 104976 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA downstream 104991 21478700 ~ 21493435 (+) True LOC110523407
XM_021602086.2 mRNA downstream 144848 21518557 ~ 21521828 (+) True LOC110523409
XM_021602084.2 mRNA downstream 153846 21527555 ~ 21534161 (+) True LOC110523408
TU428818 other upstream 212347 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 534707 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 612765 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 774403 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1387418 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 798826 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 798826 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1130043 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1228401 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1568583 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile