RNA id: TU429112



Basic Information


Item Value
RNA id TU429112
length 608
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G377520
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21571209 ~ 21572272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGGGGACGTGTGGGggcagaaggagaaggaggaagaatgCTTTAGCAAGTACCTGAGGGTTTCCATGGGGATTGCATGTCAACATGGGGAATGTTAATAaacattaaagctgcaatatgtaactttctgGGCAAACCGACCAAATTCGCATAgaatagatctgtcattctcattgaaagcaagtctaagaagtggtagatctgttctatgtgtgctatttatATTTTTCCTGTTCAGTTAATGAGTCAGCACATAGTCACACAGGCTgagtactagtagcagtagcagtagtaatagtagtagcagtagcagtagtaatagtagtagcagtagtagcagtaacagtagaagCAGTAGTACTAGTAAAAGTaattgtagcagcagtagtagtagtagctgaagcagtagtagtagtagtagtagcagtagtagcagcagtagtagtagtagtagtagtagtagtagtagtagcagtagtagcagcagtagtagtagtagcagaagcagtagtagtaatagtagtagtagcagcagcagtagtagtagcagaagcagtagtagtaatagtagtagtagtagtagcagtagtaatagtatcagtagtaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU429108 lncRNA upstream 1995 21568954 ~ 21569214 (+) True G377517
TU429104 lncRNA upstream 5603 21565274 ~ 21565606 (+) True G377513
TU429096 lncRNA upstream 20648 21550337 ~ 21550561 (+) True G377505
TU429077 lncRNA upstream 52963 21517745 ~ 21518246 (+) True G377494
TU429037 lncRNA upstream 115773 21450467 ~ 21455436 (+) True G377455
TU429116 lncRNA downstream 4932 21577204 ~ 21577584 (+) True G377523
TU429120 lncRNA downstream 17223 21589495 ~ 21591705 (+) False G377527
TU429122 lncRNA downstream 17223 21589495 ~ 21591705 (+) False G377527
TU429124 lncRNA downstream 17223 21589495 ~ 21591705 (+) False G377527
TU429125 lncRNA downstream 17223 21589495 ~ 21591705 (+) False G377527
XM_021602084.2 mRNA upstream 37048 21527555 ~ 21534161 (+) True LOC110523408
XM_021602086.2 mRNA upstream 49381 21518557 ~ 21521828 (+) True LOC110523409
XM_036977038.1 mRNA upstream 77774 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA upstream 77774 21478700 ~ 21493435 (+) True LOC110523407
XM_021602081.2 mRNA upstream 94038 21473853 ~ 21477171 (+) True LOC110523406
XM_021602088.2 mRNA downstream 6718 21578990 ~ 21597442 (+) True LOC110523411
XM_021602089.2 mRNA downstream 29761 21602033 ~ 21609081 (+) True LOC110523412
XM_036977040.1 mRNA downstream 43928 21616200 ~ 21622938 (+) False LOC110523413
XM_036977041.1 mRNA downstream 46650 21618922 ~ 21622938 (+) True LOC110523413
XM_021602091.2 mRNA downstream 61260 21633532 ~ 21635979 (+) True LOC110523414
TU428818 other upstream 412290 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 734650 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 812708 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 974346 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1587361 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 600263 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 600263 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 931480 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1029838 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1370020 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile