RNA id: TU429125


Basic Information

Item Value
RNA id TU429125
length 1388
lncRNA type intronic
GC content 0.40
exon number 3
gene id G377527
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21589495 ~ 21591705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacccaacaacattatataatatcccctcctcatggttacagacccaacaacattatataatataccctcctcatggttacagacccaacaacattatatagtatcctctcctcatggttacagacccaacaacattatataatatcccctcctcatggttacagacccagcAACATTATAtaatatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagaccaaacaacattatatagtatcccctcctcatggttacatactcaacaacattatatagtatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatatagtctcccctcctcatggttacagaccaaacaacattatatagtatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagaccaaacaacattatatagtatcccctcctcatggttacatacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatataatatcccctcctcatggttacagacccaacaacattatataatatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacatacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatataatatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacatacccaacaacattatatagtatcccctcctcatggttacagacccagcAACATTATAtaatatctcctcatggttacatacccaacaacattatatagtatcccctcctcatggttacagacccagcAACATTATAtaatatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatataatatcccctcctcatggttacatacccaacaacattatatagtatcccctcctcttGAAGAAAAGCACATGAgctaatttatgcagcagcatacaatatatttttttcgTTGTTGTGcagtgctcacttgaacaggcaCGACAGTCCgtcttgtgggcaaattttgtcatcaaaggtgcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429116 lncRNA upstream 11911 21577204 ~ 21577584 (+) True G377523
TU429112 lncRNA upstream 17223 21571209 ~ 21572272 (+) True G377520
TU429108 lncRNA upstream 20281 21568954 ~ 21569214 (+) True G377517
TU429104 lncRNA upstream 23889 21565274 ~ 21565606 (+) True G377513
TU429096 lncRNA upstream 38934 21550337 ~ 21550561 (+) True G377505
TU429137 lncRNA downstream 20414 21612119 ~ 21612381 (+) True G377533
TU429139 lncRNA downstream 23373 21615078 ~ 21615793 (+) True G377535
TU429235 lncRNA downstream 174042 21765747 ~ 21769880 (+) False LOC110523419
TU429234 lncRNA downstream 174470 21766175 ~ 21769880 (+) True LOC110523419
TU429245 lncRNA downstream 188683 21780388 ~ 21780616 (+) True G377619
XM_021602084.2 mRNA upstream 55334 21527555 ~ 21534161 (+) True LOC110523408
XM_021602086.2 mRNA upstream 67667 21518557 ~ 21521828 (+) True LOC110523409
XM_036977038.1 mRNA upstream 96060 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA upstream 96060 21478700 ~ 21493435 (+) True LOC110523407
XM_021602081.2 mRNA upstream 112324 21473853 ~ 21477171 (+) True LOC110523406
XM_021602089.2 mRNA downstream 10328 21602033 ~ 21609081 (+) True LOC110523412
XM_036977040.1 mRNA downstream 24495 21616200 ~ 21622938 (+) False LOC110523413
XM_036977041.1 mRNA downstream 27217 21618922 ~ 21622938 (+) True LOC110523413
XM_021602091.2 mRNA downstream 41827 21633532 ~ 21635979 (+) True LOC110523414
XM_036977042.1 mRNA downstream 77716 21669421 ~ 21684268 (+) False LOC110523415
TU428818 other upstream 430576 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 752936 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 830994 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 992632 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1605647 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 580830 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 580830 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 912047 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1010405 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1350587 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile