RNA id: TU429278


Basic Information

Item Value
RNA id TU429278
length 324
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G377650
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21834717 ~ 21835040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttcacctgtgaggggagaaggagagaaaagaaacacacacacaggatacacacacaggatacttgtatccgtaacacatgtaatcctagtaaaaattctgtgtcttaggtcatttaggatcaccactttattttaagaatgtgaaatgtcagaataatagtagagagaatgatttctttcagcttttatttctttcatcacattcccagtgggtcagaagtttacatacactcaattaatatttggtagcattgcctttaaatggtttaacttgggtcaaacgtttcagatagccttccacaagcttcccacaataagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429270 lncRNA upstream 11867 21821582 ~ 21822850 (+) True LOC110523421
TU429256 lncRNA upstream 42908 21791502 ~ 21791809 (+) True G377630
TU429255 lncRNA upstream 43289 21790878 ~ 21791428 (+) True G377629
TU429254 lncRNA upstream 43919 21790581 ~ 21790798 (+) True G377628
TU429245 lncRNA upstream 54101 21780388 ~ 21780616 (+) True G377619
TU429286 lncRNA downstream 14459 21849499 ~ 21850193 (+) True G377658
TU429284 lncRNA downstream 19143 21854183 ~ 21854828 (+) True G377656
TU430127 lncRNA downstream 25554 21860594 ~ 21865869 (+) True G378403
TU430130 lncRNA downstream 30948 21865988 ~ 21866406 (+) True G378406
TU430134 lncRNA downstream 32022 21867062 ~ 21867445 (+) True G378410
XM_036977050.1 mRNA upstream 11840 21816778 ~ 21822877 (+) False LOC110523421
XM_036977049.1 mRNA upstream 11840 21816785 ~ 21822877 (+) False LOC110523421
XM_036977048.1 mRNA upstream 25793 21798340 ~ 21808924 (+) True LOC110523420
XR_005051680.1 mRNA upstream 64817 21765705 ~ 21769900 (+) False LOC110523419
XM_036977047.1 mRNA upstream 64817 21765709 ~ 21769900 (+) False LOC110523419
XM_021602099.2 mRNA downstream 7028 21842068 ~ 21847237 (+) True LOC110523423
XM_021602100.2 mRNA downstream 119043 21954083 ~ 21958510 (+) True LOC110523424
LOC110522824 mRNA downstream 126435 21961475 ~ 21990926 (+) True LOC110522824
NM_001124290.1 mRNA downstream 162616 21997656 ~ 22000508 (+) True LOC100135946
XM_021602110.2 mRNA downstream 210931 22045971 ~ 22053104 (+) True LOC110523429
TU428818 other upstream 675798 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 998158 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1076216 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1237854 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1850869 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 337495 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 337495 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 668712 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 767070 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1107252 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile