RNA id: TU429284


Basic Information

Item Value
RNA id TU429284
length 646
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G377656
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21854183 ~ 21854828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggccttactggagagctcagtgacttttaatgtgccaccgtcataggatgccacctttcccaGCAAGTCAGTTTTGTGGGATGTATGCCTTGCTAGAGCTAccactgtcaactgtaagtgctgttattgagaAGTGGAAACGTATAGGAGCAGCAatggctcagccatgaagtggtagaccacacaagctcacagaacgggaccgccgagtactGAAGCGCGTTGCAACACTTACTattggaagcaaagtcagcagcttaatgaaatgggtttccatggctgagcagccgcacacaagcctaagatcctcatgtgcaatgccaagcatcggctggagaggtgtaaagcttgcagccattggactctggagcatcgttctctggagttatgaatcacgtttcaccatctggcagtccaatggacgaatctgggtttggcggatgccctGCCTGGAGAAAACTACCtccccgaatgcatagtgccagttTGGAAGTTTAGTGGaagagaaataatggtctggggatgttgttcatggttcgggccccttagttccagtgaagggaaatattttAGTGGAAACATTtactggaaagccttcccagaagagtggaagctgttatagcaccaaaggggggaccaactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429286 lncRNA upstream 3990 21849499 ~ 21850193 (+) True G377658
TU429278 lncRNA upstream 19143 21834717 ~ 21835040 (+) True G377650
TU429270 lncRNA upstream 31333 21821582 ~ 21822850 (+) True LOC110523421
TU429256 lncRNA upstream 62374 21791502 ~ 21791809 (+) True G377630
TU429255 lncRNA upstream 62755 21790878 ~ 21791428 (+) True G377629
TU430127 lncRNA downstream 5766 21860594 ~ 21865869 (+) True G378403
TU430130 lncRNA downstream 11160 21865988 ~ 21866406 (+) True G378406
TU430134 lncRNA downstream 12234 21867062 ~ 21867445 (+) True G378410
TU430155 lncRNA downstream 40213 21895041 ~ 21895265 (+) True G378431
TU430158 lncRNA downstream 41503 21896331 ~ 21896693 (+) True G378434
XM_021602099.2 mRNA upstream 6946 21842068 ~ 21847237 (+) True LOC110523423
XM_036977050.1 mRNA upstream 31306 21816778 ~ 21822877 (+) False LOC110523421
XM_036977049.1 mRNA upstream 31306 21816785 ~ 21822877 (+) False LOC110523421
XM_036977048.1 mRNA upstream 45259 21798340 ~ 21808924 (+) True LOC110523420
XM_036977046.1 mRNA upstream 84283 21765764 ~ 21769900 (+) False LOC110523419
XM_021602100.2 mRNA downstream 99255 21954083 ~ 21958510 (+) True LOC110523424
LOC110522824 mRNA downstream 106647 21961475 ~ 21990926 (+) True LOC110522824
NM_001124290.1 mRNA downstream 142828 21997656 ~ 22000508 (+) True LOC100135946
XM_021602110.2 mRNA downstream 191143 22045971 ~ 22053104 (+) True LOC110523429
XM_036977053.1 mRNA downstream 335540 22190368 ~ 22221369 (+) False LOC110523432
TU428818 other upstream 695264 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1017624 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1095682 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1257320 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1870335 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 317707 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 317707 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 648924 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 747282 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1087464 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile