RNA id: TU430155



Basic Information


Item Value
RNA id TU430155
length 225
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G378431
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21895041 ~ 21895265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


actgatgagatgagtcttcagtaaagacttaaaggttgagaccgagtttgcgtctcttacatgggtaggcagaccgttccataaaaatggagctctataggagaaagccctgcctccagctgtttgcttagaaattctagggacaattaggaggcctgcgtcttgtgaccgtagcgtacgtgtaggtatgtacggcaggaccaaatcagagagataggtaggagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU430134 lncRNA upstream 27596 21867062 ~ 21867445 (+) True G378410
TU430130 lncRNA upstream 28635 21865988 ~ 21866406 (+) True G378406
TU430127 lncRNA upstream 29172 21860594 ~ 21865869 (+) True G378403
TU429284 lncRNA upstream 40213 21854183 ~ 21854828 (+) True G377656
TU429286 lncRNA upstream 44848 21849499 ~ 21850193 (+) True G377658
TU430158 lncRNA downstream 1066 21896331 ~ 21896693 (+) True G378434
TU430171 lncRNA downstream 15390 21910655 ~ 21910945 (+) True G378447
TU430172 lncRNA downstream 16042 21911307 ~ 21911539 (+) True G378448
TU430174 lncRNA downstream 16824 21912089 ~ 21912494 (+) True G378450
TU430178 lncRNA downstream 24237 21919502 ~ 21919730 (+) True G378454
XM_021602099.2 mRNA upstream 47804 21842068 ~ 21847237 (+) True LOC110523423
XM_036977050.1 mRNA upstream 72164 21816778 ~ 21822877 (+) False LOC110523421
XM_036977049.1 mRNA upstream 72164 21816785 ~ 21822877 (+) False LOC110523421
XM_036977048.1 mRNA upstream 86117 21798340 ~ 21808924 (+) True LOC110523420
XM_036977046.1 mRNA upstream 125141 21765764 ~ 21769900 (+) False LOC110523419
XM_021602100.2 mRNA downstream 58818 21954083 ~ 21958510 (+) True LOC110523424
LOC110522824 mRNA downstream 66210 21961475 ~ 21990926 (+) True LOC110522824
NM_001124290.1 mRNA downstream 102391 21997656 ~ 22000508 (+) True LOC100135946
XM_021602110.2 mRNA downstream 150706 22045971 ~ 22053104 (+) True LOC110523429
XM_036977053.1 mRNA downstream 295103 22190368 ~ 22221369 (+) False LOC110523432
TU428818 other upstream 736122 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1058482 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1136540 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1298178 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1911193 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 277270 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 277270 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 608487 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 706845 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 1047027 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile