RNA id: TU430198


Basic Information

Item Value
RNA id TU430198
length 256
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G378472
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21945713 ~ 21945968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcaaaacagttcattcagcctcatttactgctttAAAAAAAGCATAGCTAATATGGCAGACTTGCTTAAATAAatttggtttctactgacaattgagatgtacaaactacgacataaggggacgacaagcggataagaggcaatttCATAATTTTATTTATGAGCGAGCTAGGAGaaacgtagtcaatataactatttgatCAGCACTTTTATAATGTACAGCGACATAATttagaacatgggccgttcttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430191 lncRNA upstream 8389 21936930 ~ 21937324 (+) True G378467
TU430190 lncRNA upstream 11743 21933681 ~ 21933970 (+) True G378466
TU430189 lncRNA upstream 14071 21931201 ~ 21931642 (+) True G378465
TU430179 lncRNA upstream 24781 21920232 ~ 21920932 (+) True G378455
TU430178 lncRNA upstream 25983 21919502 ~ 21919730 (+) True G378454
TU430199 lncRNA downstream 100 21946068 ~ 21946407 (+) True G378473
TU430200 lncRNA downstream 1448 21947416 ~ 21947627 (+) True G378474
TU430202 lncRNA downstream 3117 21949085 ~ 21949336 (+) True G378476
TU430204 lncRNA downstream 6767 21952735 ~ 21953001 (+) True G378478
TU430211 lncRNA downstream 26620 21972588 ~ 21974098 (+) True G378485
XM_021602099.2 mRNA upstream 98476 21842068 ~ 21847237 (+) True LOC110523423
XM_036977050.1 mRNA upstream 122836 21816778 ~ 21822877 (+) False LOC110523421
XM_036977049.1 mRNA upstream 122836 21816785 ~ 21822877 (+) False LOC110523421
XM_036977048.1 mRNA upstream 136789 21798340 ~ 21808924 (+) True LOC110523420
XM_036977046.1 mRNA upstream 175813 21765764 ~ 21769900 (+) False LOC110523419
XM_021602100.2 mRNA downstream 8115 21954083 ~ 21958510 (+) True LOC110523424
LOC110522824 mRNA downstream 15507 21961475 ~ 21990926 (+) True LOC110522824
NM_001124290.1 mRNA downstream 51688 21997656 ~ 22000508 (+) True LOC100135946
XM_021602110.2 mRNA downstream 100003 22045971 ~ 22053104 (+) True LOC110523429
XM_036977053.1 mRNA downstream 244400 22190368 ~ 22221369 (+) False LOC110523432
TU428818 other upstream 786794 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1109154 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1187212 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1348850 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1961865 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 226567 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 226567 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 557784 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 656142 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 996324 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile