RNA id: TCONS_00031427


Basic Information

Item Value
RNA id TCONS_00031427
length 3251
RNA type mRNA
GC content 0.46
exon number 22
gene id XLOC_015808
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42871831 ~ 42936509 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGAATATTGATTAGCATCTAACTAATGTTCACAGacgtgaccctggaccacaaaaccagtcttgtgttgcatgggtatatttgtGGAAATAGATGAGGAAAAAAACTTTGTGGGTcaatattatagatttttctCTTATGccaaaaaatcattagaatattaagtaaagatcatcttcCTTGATGATATTTTGTAAACGTCCTTCCATAAATAGATCAAAGCCTAATTTCTAATAGTTAATAGGTTGAGTTAATGATGATGAACTAACTAGCAATGCACAAATATTGGTTACTATACTCTCCATGATATTATCCATACTATTATCATTATCaaactaatgaaaaaataaattataaccaataaataataaattagttcTGCTGGTTGATCCATTTCATATGCATGCTGTTGATCATGTGAAATTGGCTTGGAGCTTTAAAAAATGACGTGACATGAAGTTTATTCTAGAGGAAAGAccggtttgtttatttatttattttttttgcaaaataatttcGGTAATATAAAGATCTCTATTTTTCCTTGCTGTTTCCTTTTATCCGCAGTTAAAGTTACAAAATGAATTCTGTTGTCCACTATTTACAACTGAGATCCTCCACAGCAATCAAAGATGCATGTTAAAATAGATAAACGGCTATAGATAAAAGATGCAGACGGATGTGAGAGCAGCATCTTAGATCAGTTTAATCACACGCAAACTCTCCAAAAGCATTTGTGTTTCTGCAGGTTAAACCGAATGCATTCAAAGCTGATATAGAGTCAAGATTATGTGTCTTCTGTATTTAATAAAGCTTCTTTTCTCTCTTTgcaggtgtgtgtgggtgttgTGGTCCTCTGCGGCCGCGCTACAAACGCCTAGTCGACAACATTTTCCCAGAGGACCCCAAGGATGGACTGGTTAAATCTGACATGGAGAAGTTGACGTTTTATGCGGTGTCAGCTCCTGAAAAGCTGGACCGCATCGGAGCATACCTGGCCGAGCGGCTCACCAGAGATGTGGTACGACATCGCTATGGGTATGTAGGAATAGCGATGGAAGCTTTGGATCAGTTGTTGATGGCCTGTCATTCCCAGAGTATCAAGCCATTTGTGGAGAGCTTCTTACACATGGTAGCCAAACTGCTGGAGTCCAGAGAACCAGATTTACAAGTGCTGGGCACCAACTCgtttgtGAAGTTTGCAAATATTGAGGAGGATACGCCATCTTACCATCGAAGATATGACTTTTTCGTCTCTCAGTTCAGTGCCATGTGTCATTCTACACATGAGGACCCCGAGACCCGCAGCAGGATCCGTGTAGCAGGCATTAAGGGTCTCCAGGGTGTTGTCAGAAAGACTGTGAATGATGAACTCCAGGCAATCATCTGGGAGCCTCAGCACATGGATAAACTCATCCCTTCCATGCTGTTCAACATGCAAGATAATGAGGACTCTGAGAGGGCTGGAGAGGAGAATCCGGCTTCGTTGGCGGAGAGCTGCTTTCGAGAGTTGCTGGGTCGCGCTGCTTATGGCAACATGAACAATGCAGTGCGTCCTGTGTTAGTGCATTTAGACAACCATCGTCTGTGGGACCCGAATGACTTTGCAGTTTCCTGTTTCAGGATAATCATGTACTCAATACAGGCGCAGCATTCTCACCATGTGATCCAGCAAGTGTTGTCTCACCTTGACACCCACAGTAAGAACACGCCGCGTGTGAGAGCAGGTATTGTTCAGGTGCTGCTCGAGACGGTTGCCATTGCTGCCAAGGGCTCCATCGGTCCCACGGTGCTTGAGGTGTTCAACACCCTGCTGAAGCATCTGCGGATGAGTGTGGATTTTGAGCTGGGCGACGGGTCCCGCAGGAACTCCACCAGCAGCCTCTCCTCCGTCCGCACTAAAGAAAGCGAGGAACGCATCGTCCAGAATGCCATCATCCAAACCATCGGTTTTTTTGGAGGAAATCTTCCTGATTACCAGAGAGCAGAAGTGATGATGTTCATTATGGGAAAAGTACCAGTTTACGGGACGCCATGCCACACGCTGGACACGGTCAAGATTGGGCATCAGGGCACTAAGAGAATCCAGGCGATGCTGCTCAGTTCTCTTATTATGGTTACTTCAGGGTTTAAGTGTAAAACGATGGGCGCTGGCCTCCCCGCAGCGTTTTTGGAGCCGCTTTGCTCCATCTCTCTGATGGAAGACAGTGAACTCCGGCAACTCGTCTTGGAGATTCTCCACAACATCATCGATCGTCATGACAACAGAGCCAAACTCCGAGGGATCCGGATTATTCCTAACGTAGCAGCTCTGAAGTTCAAGAGAGAAAAAATCTGCAAAGAAGATGTGGTCTTCATGAAAAAGCATGGACAGCAGTTATACAGGCACATTTATCTGGGCTGTAAGGAGGAAGATAATCTGCAGAAGAACTTTGAACTGCTCTTCACAGCGCTGGCTCTCATCACCATTGAACTGGCCAATGAGGAGGTGGTGATTGACCTGATGCGTCTGTCCATCGCCCTGCAGgaTATGGCCTTGGTCAATGAGGAGAATATGCCCATGTTTATTCGTTGTGGCATCATGGCGTTGGTCGCCGCATACCTCAACTTCCTCAGTCAGATGATCGCAAATCCTCCTTTTTGCCAACATGTCAGCAAGGTGATTGAGCTGAGAAGTTTGGATGCTCCGTATCTCCTGCCGGAACACATCTTCAGGGAAAAGTGTGTGCTTCCAGACTCTTTGGATAGGGAAGACAATGCGCTGTATTTTCAGACGGCTGATCTGGCGGAAGCAATGACTGTACCTGGATATAATGTAGAGCGACTGTCCATACCTTACATACCACAGGTCACAGATGAAGACCGGATGCCTCGTAGGAAGAGCTTTGTCGACACTATTTCTCTCCAAGTGGACATCATTTCCAACAGCGTGCCTGATCAGTCTCAGCTCGCGGAGGAGATTACGTTTGAGACCCTGAAGAAGGCCATTGATACCACTGGTCTGGAGGAGCAGGAGAGGGAGAGGAGACGACAGGTGATGGAGAAGTTCCAGAAAGCTCCGTTCGAGGAGATCGCCGCTCACTGCGAGTCTAAGGCTAACATGTTGCATGATCGCTTGGCTCAGATTTTCGAACTCACTATTCGCCCCCCTCCGAGCCCCTCGGGCACCGTGACCGTGACGTCAGGCCATGCCCAGTACCAGTCTGTGCCAGTCTATGAAATGAAGTTCCCTGACCTCTGCGTATACTGA

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1681 Predicted to be involved in protein localization to plasma membrane. Predicted to be active in plasma membrane. Orthologous to human EFR3A (EFR3 homolog A).

Ensembl:

ensembl_id ENSDART00000171393

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031426 lncRNA upstream 90577 42773384 ~ 42781254 (+) True XLOC_015807
TCONS_00031425 lncRNA upstream 97315 42773349 ~ 42774516 (+) False XLOC_015807
TCONS_00033296 lncRNA upstream 225837 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00033640 lncRNA upstream 246941 42616861 ~ 42624890 (+) True XLOC_015802
TCONS_00033638 lncRNA upstream 449187 42410888 ~ 42422644 (+) False XLOC_015798
TCONS_00033641 lncRNA downstream 36418 42972927 ~ 43010381 (+) True XLOC_015809
TCONS_00033642 lncRNA downstream 202046 43138555 ~ 43163518 (+) True XLOC_015811
TCONS_00033644 lncRNA downstream 717111 43653620 ~ 43659284 (+) False XLOC_015814
TCONS_00033643 lncRNA downstream 717111 43653620 ~ 43659284 (+) False XLOC_015814
TCONS_00033645 lncRNA downstream 718379 43654888 ~ 43659284 (+) False XLOC_015814
TCONS_00031424 mRNA upstream 123174 42724404 ~ 42748657 (+) True XLOC_015806
TCONS_00031423 mRNA upstream 149791 42715995 ~ 42722040 (+) True XLOC_015805
TCONS_00031422 mRNA upstream 153016 42715995 ~ 42718815 (+) False XLOC_015805
TCONS_00031421 mRNA upstream 153932 42715995 ~ 42717899 (+) False XLOC_015805
TCONS_00031420 mRNA upstream 154620 42715995 ~ 42717211 (+) False XLOC_015805
TCONS_00031430 mRNA downstream 268410 43204919 ~ 43388816 (+) False XLOC_015812
TCONS_00031431 mRNA downstream 268468 43204977 ~ 43330059 (+) False XLOC_015812
TCONS_00031432 mRNA downstream 268468 43204977 ~ 43389248 (+) False XLOC_015812
TCONS_00031433 mRNA downstream 268512 43205021 ~ 43329698 (+) False XLOC_015812
TCONS_00031435 mRNA downstream 532732 43469241 ~ 43493562 (+) False XLOC_015813
TCONS_00031414 other upstream 284796 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031413 other upstream 448032 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031377 other upstream 1835640 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031374 other upstream 2814815 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031335 other upstream 4993527 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031429 other downstream 62293 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031434 other downstream 343092 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031447 other downstream 1416164 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031458 other downstream 1627869 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031468 other downstream 1987290 44923799 ~ 44924676 (+) True XLOC_015830

Expression Profile

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