RNA id: TU430204


Basic Information

Item Value
RNA id TU430204
length 267
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G378478
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21952735 ~ 21953001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttgatttgatttaggagcgccacttctgggtgagcattttcttctttgcttattaCCTTATAGGGTTTGTTGAGAgtcgtcttagtgccagcttcgttctgtggtggtaaatagacggctacgaataatatagatgaaaactctcttggtagatagtgtggtctacatcttatcataaggtactctacctcaggcgagcaataccttgagacttctttaatattagacattgcgcaccagctgttattgacaaatagacacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430202 lncRNA upstream 3399 21949085 ~ 21949336 (+) True G378476
TU430200 lncRNA upstream 5108 21947416 ~ 21947627 (+) True G378474
TU430199 lncRNA upstream 6328 21946068 ~ 21946407 (+) True G378473
TU430198 lncRNA upstream 6767 21945713 ~ 21945968 (+) True G378472
TU430191 lncRNA upstream 15411 21936930 ~ 21937324 (+) True G378467
TU430211 lncRNA downstream 19587 21972588 ~ 21974098 (+) True G378485
TU430218 lncRNA downstream 27930 21980931 ~ 21981344 (+) True G378489
TU430212 lncRNA downstream 29511 21982512 ~ 21983631 (+) False G378486
TU430214 lncRNA downstream 29511 21982512 ~ 21984025 (+) False G378486
TU430215 lncRNA downstream 29511 21982512 ~ 22005024 (+) True G378486
XM_021602099.2 mRNA upstream 105498 21842068 ~ 21847237 (+) True LOC110523423
XM_036977050.1 mRNA upstream 129858 21816778 ~ 21822877 (+) False LOC110523421
XM_036977049.1 mRNA upstream 129858 21816785 ~ 21822877 (+) False LOC110523421
XM_036977048.1 mRNA upstream 143811 21798340 ~ 21808924 (+) True LOC110523420
XM_036977046.1 mRNA upstream 182835 21765764 ~ 21769900 (+) False LOC110523419
XM_021602100.2 mRNA downstream 1082 21954083 ~ 21958510 (+) True LOC110523424
LOC110522824 mRNA downstream 8474 21961475 ~ 21990926 (+) True LOC110522824
NM_001124290.1 mRNA downstream 44655 21997656 ~ 22000508 (+) True LOC100135946
XM_021602110.2 mRNA downstream 92970 22045971 ~ 22053104 (+) True LOC110523429
XM_036977053.1 mRNA downstream 237367 22190368 ~ 22221369 (+) False LOC110523432
TU428818 other upstream 793816 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1116176 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1194234 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1355872 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1968887 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 219534 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 219534 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 550751 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 649109 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 989291 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile