RNA id: TU430215


Basic Information

Item Value
RNA id TU430215
length 296
lncRNA type read_through
GC content 0.50
exon number 2
gene id G378486
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21982512 ~ 22005024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacggccctctctctgtcaggcccgtccttgagtgctttttagacactttaagaaatcacgatggatgcagattgctattaatcctccgtgcaactggtgattgaaaacgtgcatctggtaacccaaaatttcaaatatggttcaaaatgaatttaaaggcacccctctcattgttccccgctatgggagcaccccactaaggccctgtctcggtcggggccAGTACTCTGCTCTGTGAGTCGTCTCCCTGGAGAAGACAGAGTCAGAGGAGCTGCTGGTGTTTGGACCCAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430218 lncRNA upstream 1168 21980931 ~ 21981344 (+) True G378489
TU430211 lncRNA upstream 8414 21972588 ~ 21974098 (+) True G378485
TU430204 lncRNA upstream 29511 21952735 ~ 21953001 (+) True G378478
TU430202 lncRNA upstream 33176 21949085 ~ 21949336 (+) True G378476
TU430200 lncRNA upstream 34885 21947416 ~ 21947627 (+) True G378474
TU430244 lncRNA downstream 28816 22033840 ~ 22035994 (+) False G378512
TU430245 lncRNA downstream 28816 22033840 ~ 22036950 (+) False G378512
TU430248 lncRNA downstream 28816 22033840 ~ 22035994 (+) False G378512
TU430250 lncRNA downstream 28816 22033840 ~ 22036950 (+) True G378512
TU430251 lncRNA downstream 32359 22037383 ~ 22037854 (+) True G378513
XM_021602100.2 mRNA upstream 24002 21954083 ~ 21958510 (+) True LOC110523424
XM_021602099.2 mRNA upstream 135275 21842068 ~ 21847237 (+) True LOC110523423
XM_036977050.1 mRNA upstream 159635 21816778 ~ 21822877 (+) False LOC110523421
XM_036977049.1 mRNA upstream 159635 21816785 ~ 21822877 (+) False LOC110523421
XM_036977048.1 mRNA upstream 173588 21798340 ~ 21808924 (+) True LOC110523420
XM_021602110.2 mRNA downstream 40947 22045971 ~ 22053104 (+) True LOC110523429
XM_036977053.1 mRNA downstream 185344 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA downstream 185345 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA downstream 185345 22190369 ~ 22221369 (+) True LOC110523432
XM_036977064.1 mRNA downstream 763641 22768665 ~ 22799421 (+) True LOC110523445
TU428818 other upstream 823593 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1145953 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1224011 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1385649 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1998664 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 167511 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 167511 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 498728 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 597086 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 937268 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile