RNA id: TU430250


Basic Information

Item Value
RNA id TU430250
length 2467
lncRNA type antisense_over
GC content 0.49
exon number 5
gene id G378512
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22033840 ~ 22036950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTTTATTGCAAAAGACATAAGACAGTAATTATACAGTGATAGTGTGATACAAAAATAGAACAACTTTTCACAATGATAAAGTGTAGCACCATGTGATGGAAATCCAACCCCTGGCATGGAGAAGATGGTCCATGTAGGATAATGTACATGTGGACCCATTAAAGTGAGACTCAGCCATATAACTTTTGCCATGAACCTCAGATTCACACTGCTGCAACGTGATAGCTGCGAGACCAAAACAGCGAGAAGTTTAGCCTCACACCGTTTGTTGTTGCGGAAGTTGGCCCGAATCTGCCGTATCTACCTTCAAAATACATATATTATTATCCAAACATGTAGAACCTTTTACGCCATATATACAAACATGTAGAACCTTTTACGCCATATATACAAACATGTGTACCAGAACTAAAACATTCCTGGGTCTCGTTTCACATTCACTCATGTCAGAGGAACAACCACTGCCCTCGGGCAGCTAAGTGACTCCTAAGGGTTGATATAGTATTGGGCAACTAGTCTCTTCTGAGAAGAGAAAATCAGTGGTGAGCTACACAGGGGGTTGGGAGGAATGACTTAAGGAccaggagtgtgtttgtgtggggttCAGTGGAGGAGTAGCACAATCTGAGACGTGTACGATAACCCTACTGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGAGTCAGCATCTCTTCAAAGATGGCTCCCTTCACGTTGGAGCCCCGAAGGTTAGCTTCCTGTAGATCGCATCCAGACAGGTCACAgttctgagagagagggggagaaagagagggagggagctatGTTTGAgaggtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacctccaGGTCTGTGCCAGCCAGTGTAGCTCCTCTCAGGTTGCAGTTTTTCAGCTTGGCGTTCTTCAGTGTGGCAACTCGCAGGTTGATACCTGTCATCTGACTACCCTCCATGTCCACCCCCTTTAGGTTGGCACCTCCATGTTGGCTTTGACTCCAGCAGGGTCCTCAAAGTTACAGCCTCTCAGAGATGCACCCTCCGCATTAGAACACAGCATCTTAACACCCTGTAGGTTAGctccctgtaacacacacacacacacacacacacacattagaacaCAGCATCTTAACACCCTGTAGGTTAGctccctgtaacacacacacacagtaacacacgtCAAGGCAGGCTGAGGACAGGTCTGCCCGCTCCAGGTTGGCACCACTGAGGTTGGCGTGAGTGAGGTTGGCAGCTCTCAGGTTGGCCATCTTAAAGTTGATGTAGCGCAGGTCCAGGCGAGACAGGTCTGCACCGCTGAAGTTcagaccctgtgtgtgtgtgtgagtgagagagagatagagggagatcaAAGAGGACAGTGTCAGACAAGATAGAGCATAGCCACTGAAAACAGATACATTTTGGTGAGTGTGTGCTACCTGACAGCGCAGCTCTGACTTGGTGGGTGTGGCCAACAGGAAACGTACAAACTCCTTCCTGGTTAGAGGGGAGTGGTCATCAGCAGGCTGGGAACTCTGGGAAGGAGAAAATATGGTGTAGTTAGGATAGACAAGCCTCATGCACACTTAcggtattcacacacacaccttgatcAGGTTCTCCAGTTGCTCAGCCAGCTGCTCAATGCCGAAGAACCGAGCTTCCTCCAGGACCcctgagacagagaaagagatgaagtagctattagtgtgtgtgtgtgtgtaagtccaGTGTGTACATTGTGAGTGTGTGGCATACCCAGTGGGTTGATGCCGTCATTGATGATGAGTTGTCCGTGTCTCAGGTAGTTGAGGATTGGTTCAAAGTAGCCTGGACTCCTGTCTATCAGGTAGGCACCATGGGAGTCCTGTTTATTAccccacacatctacacacacacggAATTTGGGACATGAAAATTGAGTGGAGGAGAGTGTGAGTGGTGAATTGTGGGAGTGACATCATCACCTTTGTCTCGGAACATGTGGGCCAGCATGCTCGCTGGTTCTTTACTGACCAGAGTGCTCCtgaggagaaaacacaccacacaggttATGTGTATCAATAGAATGGAGTGGACAGACTGCAAGGTTGTCATGGTTACCGTGTGGTGGTGAAGCAGCAACCCCCAACGTTGAGCGTCAGCCAATCAGTGTGAGTTTGGAACCAGTCTGGACAACCAGGGTCATCCTGGGGGTCTGCACACTTTGTCTTTCTCGCATCTGAGGGAAGTCATACAGATAGCAAGTACATCCCACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430215 lncRNA upstream 28816 21982512 ~ 22005024 (+) True G378486
TU430214 lncRNA upstream 49815 21982512 ~ 21984025 (+) False G378486
TU430212 lncRNA upstream 50209 21982512 ~ 21983631 (+) False G378486
TU430218 lncRNA upstream 52496 21980931 ~ 21981344 (+) True G378489
TU430211 lncRNA upstream 59742 21972588 ~ 21974098 (+) True G378485
TU430251 lncRNA downstream 433 22037383 ~ 22037854 (+) True G378513
TU430319 lncRNA downstream 2044 22038994 ~ 22039248 (+) True G378570
TU430320 lncRNA downstream 2399 22039349 ~ 22039566 (+) True G378571
TU430322 lncRNA downstream 3441 22040391 ~ 22040640 (+) True G378573
TU430329 lncRNA downstream 22592 22059542 ~ 22060247 (+) True G378579
NM_001124290.1 mRNA upstream 33332 21997656 ~ 22000508 (+) True LOC100135946
LOC110522824 mRNA upstream 42914 21961475 ~ 21990926 (+) True LOC110522824
XM_021602100.2 mRNA upstream 75330 21954083 ~ 21958510 (+) True LOC110523424
XM_021602099.2 mRNA upstream 186603 21842068 ~ 21847237 (+) True LOC110523423
XM_036977049.1 mRNA upstream 210963 21816785 ~ 21822877 (+) False LOC110523421
XM_021602110.2 mRNA downstream 9021 22045971 ~ 22053104 (+) True LOC110523429
XM_036977053.1 mRNA downstream 153418 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA downstream 153419 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA downstream 153419 22190369 ~ 22221369 (+) True LOC110523432
XM_036977064.1 mRNA downstream 731715 22768665 ~ 22799421 (+) True LOC110523445
TU428818 other upstream 874921 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1197281 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1275339 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1436977 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 2049992 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 135585 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 135585 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 466802 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 565160 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 905342 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile