RNA id: TU430320


Basic Information

Item Value
RNA id TU430320
length 218
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G378571
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22039349 ~ 22039566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagctagctctcccaatcaacacccgtgattgctttatgcctcactttacctctctctcaaatgtcaatatgccttgtacacTGTTGTTTAGGacagttatcattgttttagtttactgcggagctcctagtcccactcaacatgcctcagatacctcctttgtcccatctcccacacatgcggtgacctcacccagcataactagcccgtccagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430319 lncRNA upstream 101 22038994 ~ 22039248 (+) True G378570
TU430251 lncRNA upstream 1495 22037383 ~ 22037854 (+) True G378513
TU430245 lncRNA upstream 2399 22033840 ~ 22036950 (+) False G378512
TU430250 lncRNA upstream 2399 22033840 ~ 22036950 (+) True G378512
TU430244 lncRNA upstream 3355 22033840 ~ 22035994 (+) False G378512
TU430322 lncRNA downstream 825 22040391 ~ 22040640 (+) True G378573
TU430329 lncRNA downstream 19976 22059542 ~ 22060247 (+) True G378579
TU430332 lncRNA downstream 25401 22064967 ~ 22066212 (+) True G378582
TU430333 lncRNA downstream 26824 22066390 ~ 22067020 (+) True G378583
TU430335 lncRNA downstream 28339 22067905 ~ 22068991 (+) True G378584
NM_001124290.1 mRNA upstream 38841 21997656 ~ 22000508 (+) True LOC100135946
LOC110522824 mRNA upstream 48423 21961475 ~ 21990926 (+) True LOC110522824
XM_021602100.2 mRNA upstream 80839 21954083 ~ 21958510 (+) True LOC110523424
XM_021602099.2 mRNA upstream 192112 21842068 ~ 21847237 (+) True LOC110523423
XM_036977049.1 mRNA upstream 216472 21816785 ~ 21822877 (+) False LOC110523421
XM_021602110.2 mRNA downstream 6405 22045971 ~ 22053104 (+) True LOC110523429
XM_036977053.1 mRNA downstream 150802 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA downstream 150803 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA downstream 150803 22190369 ~ 22221369 (+) True LOC110523432
XM_036977064.1 mRNA downstream 729099 22768665 ~ 22799421 (+) True LOC110523445
TU428818 other upstream 880430 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1202790 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1280848 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1442486 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 2055501 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 132969 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 132969 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 464186 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 562544 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 902726 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile