RNA id: TU430335



Basic Information


Item Value
RNA id TU430335
length 1087
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G378584
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22067905 ~ 22068991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agaaaattgtaaaaataaagaaaaagccttgaatgagtaggtgttctaaaacctttgaacGGCAATGTATGTACATTCTGATCGTTGACCATGGCTCTGATATTTCTACATTTTTCTCTTTATTCATTTTAAGGGATTTGTGTCTTTTGTTTTgcattgttaggtattactgcactgatgGAGTACCAaatataagcatttcgctgcaactgtgataacatctgcaaaatatgagTATGTGgtcaatcaaatttgatttgattttgatttgatctcaAGGCATCCCTGACTTCAGaattgactgtctgactgacagtCTGTCCATCTTTCTGCCTGGCTTAACAGCTTAACACCCCAGGATGATGTCAATATCTGGTGAAGGCAGTTTTTCTGGGGACAAGCTGAATGAGCTCAGAAATACATCATCACCATTGAAACAGAGCCCACGAGTCCCTGGttctgtcagtctctctgctGCAGTCTCTCCAGATGTTTGCTACCTAGCGTAGCTGCATGTGTGCAATCTGTCCATGAGCTGCTCTGTCGATTAGCTGTATAGATCTGTTTGTTTGCTTTTAGCGAAGTGCATTCTGTATACTCTGTAGGGCCTGCGATGCTTTGTAGGAATTCAGAAATCGACCGATCTCTGAGACTGGGGCCAACCAGCTCTGTCTTTGACAGTCAGTCCAGCTGCTTAgttccactttctctctctattaGCGTTAGCGGCTCTCTATTAGTTCTGTCCATTGGGGCGTTCTGTCTGTTAGCTGCTTGCTTGATATGAACTTTACCCTTGTTGTTTACATCGTGTCTGACAGCTGTACACATTACACAATGTCCATTAGCTCTTAGCCATTAGCATTAGCCCCTAGCTCTGTCGGCTAGCTGTTAGCTGCATATGTTAACACTGGGCTCAGTCCGTGGCGGTGGAGCGATGCTCATTGACCCTGCCCGGTTCAGCATCGACATCTTGGTGATCCCCTCGCTGCCAACGGTGGAGAGCGGGAAATTCTCGTAGCTCTCTGGCGCCCCCAATCCACAGTGGCAGCGCTGCAGCTGGGCCTTCAACTCCCTCTGGAAGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU430333 lncRNA upstream 885 22066390 ~ 22067020 (+) True G378583
TU430332 lncRNA upstream 1693 22064967 ~ 22066212 (+) True G378582
TU430329 lncRNA upstream 7658 22059542 ~ 22060247 (+) True G378579
TU430322 lncRNA upstream 27265 22040391 ~ 22040640 (+) True G378573
TU430320 lncRNA upstream 28339 22039349 ~ 22039566 (+) True G378571
TU430338 lncRNA downstream 308 22069299 ~ 22069557 (+) True G378585
TU430339 lncRNA downstream 952 22069943 ~ 22070292 (+) True G378586
TU430341 lncRNA downstream 2308 22071299 ~ 22071529 (+) True G378588
TU430343 lncRNA downstream 3426 22072417 ~ 22104582 (+) True G378590
TU430371 lncRNA downstream 31503 22100494 ~ 22106353 (+) True G378615
XM_021602110.2 mRNA upstream 14801 22045971 ~ 22053104 (+) True LOC110523429
NM_001124290.1 mRNA upstream 67397 21997656 ~ 22000508 (+) True LOC100135946
LOC110522824 mRNA upstream 76979 21961475 ~ 21990926 (+) True LOC110522824
XM_021602100.2 mRNA upstream 109395 21954083 ~ 21958510 (+) True LOC110523424
XM_021602099.2 mRNA upstream 220668 21842068 ~ 21847237 (+) True LOC110523423
XM_036977053.1 mRNA downstream 121377 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA downstream 121378 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA downstream 121378 22190369 ~ 22221369 (+) True LOC110523432
XM_036977064.1 mRNA downstream 699674 22768665 ~ 22799421 (+) True LOC110523445
XM_021602137.2 mRNA downstream 805179 22874170 ~ 22903435 (+) True dmgdh
TU428818 other upstream 908986 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1231346 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1309404 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1471042 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 2084057 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 103544 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 103544 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 434761 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 533119 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 873301 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile