RNA id: TU430371



Basic Information


Item Value
RNA id TU430371
length 337
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G378615
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22100494 ~ 22106353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caggctagtaataggggtggcaacaattttggcagataattttagaaagaaagggtccagattgtctagcccggctgatttgtaggggtccagattttgcagctcattcagaacatcagctgagcagatttgggagaaggagaaatggggaaggcttgggcgagttgttgtggagggtgcagtgctgttgaccggggtaggagtagccaggtggaaagcatggccagccgtagaaaaatgcttattgaaattctcaattatggtggatttatcagtggtgacagtgtttcctatcttcagtgcagtgggcagctgggaggaggtgttcttattctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU430341 lncRNA upstream 28965 22071299 ~ 22071529 (+) True G378588
TU430339 lncRNA upstream 30202 22069943 ~ 22070292 (+) True G378586
TU430338 lncRNA upstream 30937 22069299 ~ 22069557 (+) True G378585
TU430335 lncRNA upstream 31503 22067905 ~ 22068991 (+) True G378584
TU430333 lncRNA upstream 33474 22066390 ~ 22067020 (+) True G378583
TU430387 lncRNA downstream 22464 22128817 ~ 22151470 (+) True G378630
TU430410 lncRNA downstream 53556 22159909 ~ 22160188 (+) True G378653
TU430355 lncRNA downstream 73328 22179681 ~ 22180829 (+) True G378601
TU430443 lncRNA downstream 131098 22237451 ~ 22237915 (+) True G378678
TU430447 lncRNA downstream 134936 22241289 ~ 22241544 (+) True G378682
XM_021602110.2 mRNA upstream 47390 22045971 ~ 22053104 (+) True LOC110523429
NM_001124290.1 mRNA upstream 99986 21997656 ~ 22000508 (+) True LOC100135946
LOC110522824 mRNA upstream 109568 21961475 ~ 21990926 (+) True LOC110522824
XM_021602100.2 mRNA upstream 141984 21954083 ~ 21958510 (+) True LOC110523424
XM_021602099.2 mRNA upstream 253257 21842068 ~ 21847237 (+) True LOC110523423
XM_036977053.1 mRNA downstream 84015 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA downstream 84016 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA downstream 84016 22190369 ~ 22221369 (+) True LOC110523432
XM_036977064.1 mRNA downstream 662312 22768665 ~ 22799421 (+) True LOC110523445
XM_021602137.2 mRNA downstream 767817 22874170 ~ 22903435 (+) True dmgdh
TU428818 other upstream 941575 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1263935 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1341993 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1503631 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 2116646 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 66182 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 66182 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 397399 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 495757 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 835939 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile