Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031430 |
| length | 4320 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 25 |
| gene id | XLOC_015812 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 43204919 ~ 43389248 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0021535 | cell migration in hindbrain | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0035845 | photoreceptor cell outer segment organization | biological_process |
| GO:0045197 | establishment or maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:1902414 | protein localization to cell junction | biological_process |
| GO:0035907 | dorsal aorta development | biological_process |
| GO:0060242 | contact inhibition | biological_process |
| GO:0030010 | establishment of cell polarity | biological_process |
| GO:0048048 | embryonic eye morphogenesis | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0072554 | blood vessel lumenization | biological_process |
| GO:0007405 | neuroblast proliferation | biological_process |
| GO:0048696 | regulation of collateral sprouting in absence of injury | biological_process |
| GO:0008360 | regulation of cell shape | biological_process |
| GO:0022010 | central nervous system myelination | biological_process |
| GO:0022011 | myelination in peripheral nervous system | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0051660 | establishment of centrosome localization | biological_process |
| GO:0008104 | protein localization | biological_process |
| GO:0043296 | apical junction complex | cellular_component |
| GO:0005911 | cell-cell junction | cellular_component |
| GO:0005912 | adherens junction | cellular_component |
| GO:0005938 | cell cortex | cellular_component |
| GO:0016324 | apical plasma membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0035091 | phosphatidylinositol binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030925-47 | Predicted to enable phosphatidylinositol binding activity. Acts upstream of or within several processes, including blood vessel development; eye development; and nervous system development. Located in apical plasma membrane; cell-cell junction; and cytoplasm. Is expressed in brain; neuroepithelial cell; and retina. Orthologous to human PARD3 (par-3 family cell polarity regulator). |
| ensembl_id | ENSDART00000160077 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033642 | lncRNA | upstream | 41401 | 43138555 ~ 43163518 (+) | True | XLOC_015811 |
| TCONS_00033641 | lncRNA | upstream | 194538 | 42972927 ~ 43010381 (+) | True | XLOC_015809 |
| TCONS_00031426 | lncRNA | upstream | 423665 | 42773384 ~ 42781254 (+) | True | XLOC_015807 |
| TCONS_00031425 | lncRNA | upstream | 430403 | 42773349 ~ 42774516 (+) | False | XLOC_015807 |
| TCONS_00033296 | lncRNA | upstream | 558925 | 42645388 ~ 42645994 (+) | True | XLOC_015803 |
| TCONS_00033644 | lncRNA | downstream | 264804 | 43653620 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00033643 | lncRNA | downstream | 264804 | 43653620 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00033645 | lncRNA | downstream | 266072 | 43654888 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00033646 | lncRNA | downstream | 266077 | 43654893 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00033648 | lncRNA | downstream | 266078 | 43654894 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00031427 | mRNA | upstream | 268410 | 42871831 ~ 42936509 (+) | False | XLOC_015808 |
| TCONS_00031428 | mRNA | upstream | 278596 | 42872661 ~ 42926323 (+) | True | XLOC_015808 |
| TCONS_00031424 | mRNA | upstream | 456262 | 42724404 ~ 42748657 (+) | True | XLOC_015806 |
| TCONS_00031423 | mRNA | upstream | 482879 | 42715995 ~ 42722040 (+) | True | XLOC_015805 |
| TCONS_00031422 | mRNA | upstream | 486104 | 42715995 ~ 42718815 (+) | False | XLOC_015805 |
| TCONS_00031435 | mRNA | downstream | 80425 | 43469241 ~ 43493562 (+) | False | XLOC_015813 |
| TCONS_00031436 | mRNA | downstream | 80425 | 43469241 ~ 43507278 (+) | True | XLOC_015813 |
| TCONS_00031437 | mRNA | downstream | 360405 | 43749221 ~ 43797218 (+) | False | XLOC_015815 |
| TCONS_00031438 | mRNA | downstream | 362083 | 43750899 ~ 43788045 (+) | False | XLOC_015815 |
| TCONS_00031439 | mRNA | downstream | 366458 | 43755274 ~ 43784018 (+) | True | XLOC_015815 |
| TCONS_00031429 | other | upstream | 206000 | 42998802 ~ 42998919 (+) | True | XLOC_015810 |
| TCONS_00031414 | other | upstream | 617884 | 42586738 ~ 42587035 (+) | True | XLOC_015800 |
| TCONS_00031413 | other | upstream | 781120 | 42423684 ~ 42423799 (+) | True | XLOC_015799 |
| TCONS_00031377 | other | upstream | 2168728 | 41036076 ~ 41036191 (+) | True | XLOC_015775 |
| TCONS_00031374 | other | upstream | 3147903 | 40056899 ~ 40057016 (+) | True | XLOC_015768 |
| TCONS_00031447 | other | downstream | 963857 | 44352673 ~ 44353567 (+) | False | XLOC_015820 |
| TCONS_00031458 | other | downstream | 1175562 | 44564378 ~ 44564494 (+) | True | XLOC_015827 |
| TCONS_00031468 | other | downstream | 1534983 | 44923799 ~ 44924676 (+) | True | XLOC_015830 |
| TCONS_00031495 | other | downstream | 2176397 | 45565213 ~ 45565811 (+) | True | XLOC_015853 |
| TCONS_00031505 | other | downstream | 2900044 | 46288860 ~ 46288996 (+) | True | XLOC_015865 |
