RNA id: TU430568


Basic Information

Item Value
RNA id TU430568
length 345
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G378780
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22425852 ~ 22498136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttgccccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcaacacggactttcaactccctccaaagattttctatggggttgagatctggagtgCCCTtgatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcaccatacatggccccattcattctttcctttacacggttcagtcgtcctggtccctttgcagaaaaacagccccaaagcatgatgtttccaccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430468 lncRNA upstream 134344 22287337 ~ 22291508 (+) True G378699
TU430463 lncRNA upstream 153644 22271747 ~ 22272208 (+) True G378695
TU430452 lncRNA upstream 177739 22247910 ~ 22248113 (+) True G378687
TU430451 lncRNA upstream 180525 22244777 ~ 22245327 (+) True G378686
TU430450 lncRNA upstream 181977 22243637 ~ 22243875 (+) True G378685
TU430623 lncRNA downstream 5058 22503194 ~ 22503634 (+) True G378831
TU430665 lncRNA downstream 71190 22569326 ~ 22576116 (+) True G378863
TU430714 lncRNA downstream 159183 22657319 ~ 22721825 (+) True G378908
TU430720 lncRNA downstream 227529 22725665 ~ 22727355 (+) True G378914
TU430766 lncRNA downstream 247592 22745728 ~ 22745956 (+) True G378959
XM_036977053.1 mRNA upstream 204483 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA upstream 204483 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA upstream 204483 22190369 ~ 22221369 (+) True LOC110523432
XM_021602110.2 mRNA upstream 372748 22045971 ~ 22053104 (+) True LOC110523429
NM_001124290.1 mRNA upstream 425344 21997656 ~ 22000508 (+) True LOC100135946
XM_036977064.1 mRNA downstream 270529 22768665 ~ 22799421 (+) True LOC110523445
XM_021602137.2 mRNA downstream 376034 22874170 ~ 22903435 (+) True dmgdh
XM_036977065.1 mRNA downstream 444069 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977066.1 mRNA downstream 444069 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977067.1 mRNA downstream 444069 22942205 ~ 23007315 (+) False lhfpl2a
TU430417 other upstream 193932 22172535 ~ 22231920 (+) False G378660
TU430418 other upstream 193932 22172535 ~ 22231920 (+) True G378660
TU428818 other upstream 1266933 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1589293 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1667351 20743584 ~ 20758501 (+) True LOC110522816
TU430626 other downstream 5616 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 103974 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 444156 22942292 ~ 23007287 (+) True lhfpl2a
TU432291 other downstream 1125828 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 1135885 23634021 ~ 23637091 (+) True LOC110522832

Expression Profile