RNA id: TU430665


Basic Information

Item Value
RNA id TU430665
length 2097
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G378863
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22569326 ~ 22576116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCTCAGTCAcgtccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtctcttccactgttctcagtctcttccactgttctcagtctcttctactgttctcagtctcttccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttctACTGTTctgagtcacttccactgttctcagtctattccactgttctcagtctattccactgttctgtcttttCCACTGTTctgagtcacttccactgttctcagtcacttccactgttctcagtctcttccactgttctcactctcttccactgttctcagtcacttccactgttctcagtctcttccacggttctcagtctcttccattgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttccactgttctcagtctcttccactgttctcagtctcttccactgttctgtctcttccactgttctcagtctcttccactgttctcagtctcttccactgttctcagtctcttccactgttcccagtcacttccactgttcccagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttctactgttctcggtctcttccactgttctgtctctttcactgttctcagtctcttccactgttctcagtcacttccactgttctgtctcttctactgttatcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttccactgttctcagtcacttccactgtgctcagtcacttccactgttctgtctcttctactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccgctgttctcagtctcttccactgttctgtcttttCCACTGTTctgagtcacttccactgttctcagtctattccactgttctcagtctattccactgttctgtcttttCCACTGTTctgagtcacttccactgttctcagtcacttccactgttctcagtctcttccactgttctcactctcttccactgttcttagtcacttccactgttctcagtctcttccacggttctcagtcacttccactgttctcagtcacttccactgttctcagtctctttcactgttctgtctcttccactgttatcagtctcttccactgttctcagtcacttacactgttctcagtctcttccactgttctcagtctcttccactgttctcagtcacttccactgttctcagtcacttccactgttccttctcttctactgttctcagtcacttccactgttctgacccttccactgttctcagtcacttccactgttctgtctcttctactgttctcagtcacttccactgttctcagtctcttccactgttctcagtcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttctactgttctcggtctcttccactgttctgtctctttcactgttctcagtctcttccactgttctcagtcacttccactgttctgactcttccactgttctcagtcacttccactgttctgtcttttctactgttctcagtcacttccactgtgctcagtcacttccactgttctcagtcacttccactgttctgtctcttccactgttctcagtcacttccactgtgctcagtcacttccactgttctgtctcttctactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttctactgttctcagtctcttccactgttctcagtcacttccactgttctcagtctcttccactgttctgtctcttctactgttctcagtctcttccactgttctcagtcacttccactgttctcagtctcttccactgttctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430623 lncRNA upstream 65692 22503194 ~ 22503634 (+) True G378831
TU430568 lncRNA upstream 71190 22425852 ~ 22498136 (+) True G378780
TU430468 lncRNA upstream 277818 22287337 ~ 22291508 (+) True G378699
TU430463 lncRNA upstream 297118 22271747 ~ 22272208 (+) True G378695
TU430452 lncRNA upstream 321213 22247910 ~ 22248113 (+) True G378687
TU430714 lncRNA downstream 81203 22657319 ~ 22721825 (+) True G378908
TU430720 lncRNA downstream 149549 22725665 ~ 22727355 (+) True G378914
TU430766 lncRNA downstream 169612 22745728 ~ 22745956 (+) True G378959
TU430769 lncRNA downstream 174466 22750582 ~ 22750805 (+) True G378962
TU430718 lncRNA downstream 223587 22799703 ~ 22801978 (+) True G378912
XM_036977053.1 mRNA upstream 347957 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA upstream 347957 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA upstream 347957 22190369 ~ 22221369 (+) True LOC110523432
XM_021602110.2 mRNA upstream 516222 22045971 ~ 22053104 (+) True LOC110523429
NM_001124290.1 mRNA upstream 568818 21997656 ~ 22000508 (+) True LOC100135946
XM_036977064.1 mRNA downstream 192549 22768665 ~ 22799421 (+) True LOC110523445
XM_021602137.2 mRNA downstream 298054 22874170 ~ 22903435 (+) True dmgdh
XM_036977065.1 mRNA downstream 366089 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977066.1 mRNA downstream 366089 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977067.1 mRNA downstream 366089 22942205 ~ 23007315 (+) False lhfpl2a
TU430626 other upstream 63056 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 337406 22172535 ~ 22231920 (+) False G378660
TU430418 other upstream 337406 22172535 ~ 22231920 (+) True G378660
TU428818 other upstream 1410407 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1732767 20831258 ~ 20836559 (+) True LOC110522817
TU430672 other downstream 25994 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 366176 22942292 ~ 23007287 (+) True lhfpl2a
TU432291 other downstream 1047848 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 1057905 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 1164318 23740434 ~ 23741459 (+) True G380340

Expression Profile