RNA id: TU430939


Basic Information

Item Value
RNA id TU430939
length 274
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G379100
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23008076 ~ 23008349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATGTCTGTGAACTTTGATTGATGAACGTTTCTTTGCTACCTGACAATTTTacgttttttactttttaattaccgttttatATTTTTCCCTCGCTCAACTATTTTCATTCAACATTTTCaccccggacgctttatctggacatggctCTACACGACCACCACCAGCCGATGCTAAGTAGTTACATTAAcattatgccttctaattgcggtcgctgtactcataatatacagtagATCGATCACCATATGGCGAGGATAGCCGTGCTGCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430902 lncRNA upstream 56167 22949746 ~ 22951909 (+) True G379066
TU430835 lncRNA upstream 144834 22856069 ~ 22863242 (+) False G379021
TU430837 lncRNA upstream 144834 22856069 ~ 22863242 (+) False G379021
TU430836 lncRNA upstream 144834 22856103 ~ 22863242 (+) True G379021
TU430718 lncRNA upstream 206098 22799703 ~ 22801978 (+) True G378912
TU430941 lncRNA downstream 1012 23009361 ~ 23009598 (+) True G379102
TU430943 lncRNA downstream 2554 23010903 ~ 23011258 (+) True G379104
TU430944 lncRNA downstream 5129 23013478 ~ 23013715 (+) True G379105
TU430950 lncRNA downstream 12291 23020640 ~ 23020849 (+) True G379111
TU430951 lncRNA downstream 12526 23020875 ~ 23021099 (+) True G379112
XM_036977065.1 mRNA upstream 761 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977066.1 mRNA upstream 761 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977067.1 mRNA upstream 761 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977068.1 mRNA upstream 761 22942205 ~ 23007315 (+) False lhfpl2a
XM_021602139.2 mRNA upstream 761 22942206 ~ 23007315 (+) False lhfpl2a
XM_036977069.1 mRNA downstream 57305 23065654 ~ 23158020 (+) False LOC110523451
XM_036977070.1 mRNA downstream 57305 23065654 ~ 23158020 (+) False LOC110523451
XM_036977073.1 mRNA downstream 57305 23065654 ~ 23158020 (+) False LOC110523451
XM_036977071.1 mRNA downstream 66401 23074750 ~ 23158020 (+) False LOC110523451
XM_036977072.1 mRNA downstream 66401 23074750 ~ 23158020 (+) False LOC110523451
TU430848 other upstream 789 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 378407 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 501806 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 776156 22172535 ~ 22231920 (+) False G378660
TU430418 other upstream 776156 22172535 ~ 22231920 (+) True G378660
TU432291 other downstream 615615 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 625672 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 732085 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 830175 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 830175 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile