RNA id: TU430979


Basic Information

Item Value
RNA id TU430979
length 243
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G379139
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23054403 ~ 23054645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgaacactgaatacaaactatacaaaaacaataaacgaataacgaccgtgaagctataatgagaactgtgctgacacaagcaactaacataccacatagacaatcacccacaaacaaacagtgaaacccaggctacctaagtatgattctcaataagagacaactaatgacacctgcctctgattgagaaccatactaggccgaaacatagaaatcccaaaatcatagaaaaaacaaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430971 lncRNA upstream 5712 23048456 ~ 23048691 (+) True G379131
TU430955 lncRNA upstream 30590 23023584 ~ 23023813 (+) True G379115
TU430954 lncRNA upstream 30914 23023149 ~ 23023489 (+) True G379114
TU430953 lncRNA upstream 31373 23021224 ~ 23023030 (+) True G379113
TU430951 lncRNA upstream 33304 23020875 ~ 23021099 (+) True G379112
TU430982 lncRNA downstream 3874 23058519 ~ 23058747 (+) True G379142
TU431008 lncRNA downstream 61040 23115685 ~ 23116029 (+) True G379162
TU431048 lncRNA downstream 149226 23203871 ~ 23204099 (+) True G379202
TU431114 lncRNA downstream 275723 23330368 ~ 23330594 (+) True G379263
TU431124 lncRNA downstream 296460 23351105 ~ 23351363 (+) True G379273
XM_036977066.1 mRNA upstream 47088 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977069.1 mRNA downstream 11009 23065654 ~ 23158020 (+) False LOC110523451
XM_036977070.1 mRNA downstream 11009 23065654 ~ 23158020 (+) False LOC110523451
XM_036977073.1 mRNA downstream 11009 23065654 ~ 23158020 (+) False LOC110523451
XM_036977071.1 mRNA downstream 20105 23074750 ~ 23158020 (+) False LOC110523451
XM_036977072.1 mRNA downstream 20105 23074750 ~ 23158020 (+) False LOC110523451
TU430848 other upstream 47116 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 424734 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 548133 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 822483 22172535 ~ 22231920 (+) False G378660
TU432291 other downstream 569319 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 579376 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 685789 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 783879 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 783879 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile