Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031435 |
| length | 1387 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 6 |
| gene id | XLOC_015813 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 43469241 ~ 43507278 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035767 | endothelial cell chemotaxis | biological_process |
| GO:0030947 | regulation of vascular endothelial growth factor receptor signaling pathway | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0038084 | vascular endothelial growth factor signaling pathway | biological_process |
| GO:0002040 | sprouting angiogenesis | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0048010 | vascular endothelial growth factor receptor signaling pathway | biological_process |
| GO:0061300 | cerebellum vasculature development | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0001666 | response to hypoxia | biological_process |
| GO:0071526 | semaphorin-plexin signaling pathway | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0019838 | growth factor binding | molecular_function |
| GO:0017154 | semaphorin receptor activity | molecular_function |
| GO:0005021 | vascular endothelial growth factor-activated receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040611-1 | Predicted to enable several functions, including heparin binding activity; metal ion binding activity; and transmembrane signaling receptor activity. Acts upstream of or within several processes, including axon guidance; regulation of vascular endothelial growth factor receptor signaling pathway; and vasculature development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cranial neural crest cell; mid cerebral vein; retinal ganglion cell layer; somite; and trunk vasculature. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human NRP1 (neuropilin 1). |
| ensembl_id | ENSDART00000142078 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033642 | lncRNA | upstream | 305723 | 43138555 ~ 43163518 (+) | True | XLOC_015811 |
| TCONS_00033641 | lncRNA | upstream | 458860 | 42972927 ~ 43010381 (+) | True | XLOC_015809 |
| TCONS_00031426 | lncRNA | upstream | 687987 | 42773384 ~ 42781254 (+) | True | XLOC_015807 |
| TCONS_00031425 | lncRNA | upstream | 694725 | 42773349 ~ 42774516 (+) | False | XLOC_015807 |
| TCONS_00033296 | lncRNA | upstream | 823247 | 42645388 ~ 42645994 (+) | True | XLOC_015803 |
| TCONS_00033644 | lncRNA | downstream | 160058 | 43653620 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00033643 | lncRNA | downstream | 160058 | 43653620 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00033645 | lncRNA | downstream | 161326 | 43654888 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00033646 | lncRNA | downstream | 161331 | 43654893 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00033648 | lncRNA | downstream | 161332 | 43654894 ~ 43659284 (+) | False | XLOC_015814 |
| TCONS_00031432 | mRNA | upstream | 79993 | 43204977 ~ 43389248 (+) | False | XLOC_015812 |
| TCONS_00031430 | mRNA | upstream | 80425 | 43204919 ~ 43388816 (+) | False | XLOC_015812 |
| TCONS_00031431 | mRNA | upstream | 139182 | 43204977 ~ 43330059 (+) | False | XLOC_015812 |
| TCONS_00031433 | mRNA | upstream | 139543 | 43205021 ~ 43329698 (+) | False | XLOC_015812 |
| TCONS_00031427 | mRNA | upstream | 532732 | 42871831 ~ 42936509 (+) | False | XLOC_015808 |
| TCONS_00031437 | mRNA | downstream | 255659 | 43749221 ~ 43797218 (+) | False | XLOC_015815 |
| TCONS_00031438 | mRNA | downstream | 257337 | 43750899 ~ 43788045 (+) | False | XLOC_015815 |
| TCONS_00031439 | mRNA | downstream | 261712 | 43755274 ~ 43784018 (+) | True | XLOC_015815 |
| TCONS_00031440 | mRNA | downstream | 358421 | 43851983 ~ 43871387 (+) | False | XLOC_015816 |
| TCONS_00031441 | mRNA | downstream | 371013 | 43864575 ~ 43866154 (+) | True | XLOC_015816 |
| TCONS_00031434 | other | upstream | 166159 | 43279601 ~ 43303082 (+) | True | XLOC_015812 |
| TCONS_00031429 | other | upstream | 470322 | 42998802 ~ 42998919 (+) | True | XLOC_015810 |
| TCONS_00031414 | other | upstream | 882206 | 42586738 ~ 42587035 (+) | True | XLOC_015800 |
| TCONS_00031413 | other | upstream | 1045442 | 42423684 ~ 42423799 (+) | True | XLOC_015799 |
| TCONS_00031377 | other | upstream | 2433050 | 41036076 ~ 41036191 (+) | True | XLOC_015775 |
| TCONS_00031447 | other | downstream | 859111 | 44352673 ~ 44353567 (+) | False | XLOC_015820 |
| TCONS_00031458 | other | downstream | 1070816 | 44564378 ~ 44564494 (+) | True | XLOC_015827 |
| TCONS_00031468 | other | downstream | 1430237 | 44923799 ~ 44924676 (+) | True | XLOC_015830 |
| TCONS_00031495 | other | downstream | 2071651 | 45565213 ~ 45565811 (+) | True | XLOC_015853 |
| TCONS_00031505 | other | downstream | 2795298 | 46288860 ~ 46288996 (+) | True | XLOC_015865 |
