RNA id: TU431191


Basic Information

Item Value
RNA id TU431191
length 1682
lncRNA type read_through
GC content 0.39
exon number 2
gene id G379333
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23456365 ~ 23512877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTTGAAACATTTACCAGTTGTTTTTTGTAATGTTCTGTAACAGTATGGCACAGATACCATCTTTAAGACCATTTAATATTTTTGTTGATTTAATGTATCCTCCAGACCAAATATAAATTCCACTGAATACTTGTTTGTACTAAATAGATATGTAGCGCCACCTGCTGTACGTAATGCAACATGCAGGACTGTGACAAAGTGCTGTAAATGTACTTGCCTTGATGTATAATTCACACCAATAGGGGGCATCACAGCACTTCTTACTCTCAAATTAGTACCGCAATACGTTATATTTCTATCGTTGCGTGCGCAAGTGTCTGTACGCAGCATAGTACCTGCTCTGACGCGTTTTGCTCGACTTGTCTGGGTATTTGAGTAGTCAAGCAGCTCTTCCAATTCTGAATGCATAGATTATACATTCACACAAATGGAATATTTAGTAATAATGAGTGTGAGCTAAAGTTATTTGAGTGATAATATACACACAGTGGTCAGTTTATTAAGGTACACCACCTCGGCTTCGCTCCTACGCCTGTAtcactgggtgtattgatacaccattcaatgtctgcttttattatgtttacccatctaccaatcagtgcccttctttttcaaggtattgaaaaacctccctggtctttgtggttgaatctgtgtttgaaattcactgcttgactgagggaccttacagattagGTACATCCATCTTGTACCAGGTCGGACCCCCCTATGAGGTACTCATTCAAAATTCATGTTAAACACTGgcattgcacacagtgagtccatgcaacttgtaatgtgacatgttaagcacatttttaggCTTGCCATACAAAATAATTTAATACTTATTGAATTAAAAATTAaaagatgaaatgtcttgagtcatttGTAAAAGTTTCTAAAAacattgcagcagacgaccatactgggttccactcctatcagctaaaaacaagaagaagtggcTTCAGTGGGCACGTAATCACCAACTCTGGAATATTgatgagtggaaaaacattgcctgggccgatgaatcccggttcctgttgcatcATGATGATGGCAAAGTCCAGATTTGGCGTAAGCAGTAAAagtacatggccccatcctgtatggtgtcaatggtacagggtggtggctgtggtgtaatggtgtggggaatgttttcctggcacacgttaggtccctttaTACAAATTGTGCAACCTTTCTATATCCCAAATatttcaggctgttctggaggcttAGGGGGGTCCGACCTGGTACAAgaatgggtgtacctaataaactgtatggtatTTCTATACAACATTGACAACATAGTGCATAGGCTATACATTTCACAATGCTGAGTAAATATCTCTATGGCCAGCAGGCATAGCAGTGACCTCACTCAGCTTGCTTCGAAAGCATTTCCTTGTATTGTTCAGTGAGCGTTTAAGAAATGGTACAATACAGGATTGAATAAAGACTCCTTTGTTATTCCCTTATCGCAGACCATCAAACTTAAAATAAATCGTTTTGGGGAATTTAAACCTGCTTCAAGATTAAAAATTGTATTATCCATTACATTTTCACAAAACTTACATTTTCCTTTTCTCTTACCCTAAATATatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU431136 lncRNA upstream 95677 23360224 ~ 23360688 (+) True G379282
TU431133 lncRNA upstream 99936 23356006 ~ 23356429 (+) True G379279
TU431124 lncRNA upstream 105002 23351105 ~ 23351363 (+) True G379273
TU431114 lncRNA upstream 125771 23330368 ~ 23330594 (+) True G379263
TU431048 lncRNA upstream 252266 23203871 ~ 23204099 (+) True G379202
TU431264 lncRNA downstream 47145 23560022 ~ 23567553 (+) True G379392
TU431268 lncRNA downstream 53600 23566477 ~ 23586088 (+) True G379395
TU432256 lncRNA downstream 91641 23604518 ~ 23604732 (+) True G380258
TU432275 lncRNA downstream 102980 23615857 ~ 23616253 (+) True G380277
TU432277 lncRNA downstream 104749 23617626 ~ 23618216 (+) True G380279
XM_021601299.1 mRNA upstream 33481 23421643 ~ 23422884 (+) True LOC110522829
XM_036977079.1 mRNA upstream 64384 23370966 ~ 23391981 (+) False LOC110523456
XM_036977080.1 mRNA upstream 64384 23386655 ~ 23391981 (+) True LOC110523456
XM_036977075.1 mRNA upstream 204777 23237803 ~ 23251588 (+) False wdr41
XM_036977076.1 mRNA upstream 204777 23238473 ~ 23251588 (+) True wdr41
XM_036977086.1 mRNA downstream 111044 23623921 ~ 23678038 (+) False LOC110522832
XM_036977085.1 mRNA downstream 111046 23623923 ~ 23678038 (+) False LOC110522832
XM_036977088.1 mRNA downstream 111046 23623923 ~ 23678038 (+) False LOC110522832
XM_036977089.1 mRNA downstream 111046 23623923 ~ 23678038 (+) False LOC110522832
XM_036977087.1 mRNA downstream 111048 23623925 ~ 23678038 (+) False LOC110522832
TU430848 other upstream 449078 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 826696 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 950095 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 1224445 22172535 ~ 22231920 (+) False G378660
TU432291 other downstream 111087 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 121144 23634021 ~ 23637091 (+) True LOC110522832
TU432349 other downstream 227557 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 325647 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 325647 23838524 ~ 23842716 (+) False LOC110523468

Expression Profile