RNA id: TU432349



Basic Information


Item Value
RNA id TU432349
length 1026
RNA type TUCP
GC content 0.46
exon number 1
gene id G380340
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23740434 ~ 23741459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtggaaaataagtatttggtcaataacaaaagtttatctcaatactttgtgttataccctttgttggcaatgacagaggtcaaatgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcagcaCGGACTtgcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactcctttgttgccctgacggtgtgtttgggatcattgtcatgctgaaagactcacccatcttcaatgcccttgctgatggaggttttcactcaaattctcacgatacatggccccattcattctttcctttacatggatcagtcgtcctggtccctttgcagaaaacagcccgaaagcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcaactcagcattctttgtcctccaaacatgacaagttgagtttttaccaaaatgttctattttggtttcatctgaccatatgacattctcccaatcttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcagggggacacgtctggcattgcaggatttgagtccctggcagtgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtctccccgtgtggttctgggatttttgctcaccgttcttgtgatcattttgaccccacggggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataatttctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtccttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU432351 lncRNA upstream 1007 23739050 ~ 23739427 (+) False LOC118964576
TU432352 lncRNA upstream 1663 23737834 ~ 23738771 (+) False LOC118964576
TU432277 lncRNA upstream 122218 23617626 ~ 23618216 (+) True G380279
TU432275 lncRNA upstream 124181 23615857 ~ 23616253 (+) True G380277
TU432256 lncRNA upstream 135702 23604518 ~ 23604732 (+) True G380258
TU432347 lncRNA downstream 366 23741825 ~ 23747278 (+) True LOC118964576
TU432366 lncRNA downstream 11762 23753221 ~ 23753477 (+) True G380357
TU432372 lncRNA downstream 20562 23762021 ~ 23762408 (+) True G380363
TU432374 lncRNA downstream 21844 23763303 ~ 23763523 (+) True G380365
TU432345 lncRNA downstream 22320 23763779 ~ 23765844 (+) True G380336
XM_021602162.2 mRNA upstream 4966 23713080 ~ 23735468 (+) False LOC110523463
XM_021602163.2 mRNA upstream 4966 23724027 ~ 23735468 (+) True LOC110523463
NM_001165176.2 mRNA upstream 28557 23709843 ~ 23711877 (+) True vatg1
XM_036977086.1 mRNA upstream 62396 23623921 ~ 23678038 (+) False LOC110522832
XM_036977085.1 mRNA upstream 62396 23623923 ~ 23678038 (+) False LOC110522832
XM_021602173.2 mRNA downstream 97043 23838502 ~ 23842045 (+) False LOC110523468
XM_021602178.2 mRNA downstream 106759 23848218 ~ 23853553 (+) False stard4
XM_021602175.2 mRNA downstream 106777 23848236 ~ 23853553 (+) False stard4
XM_021602174.2 mRNA downstream 106779 23848238 ~ 23853553 (+) False stard4
XM_021602177.2 mRNA downstream 106779 23848238 ~ 23853553 (+) True stard4
TU432291 other upstream 103343 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other upstream 103343 23634021 ~ 23637091 (+) True LOC110522832
TU430848 other upstream 733147 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 1110765 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 1234164 22503752 ~ 22506270 (+) True G378832
TU432379 other downstream 97065 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 97065 23838524 ~ 23842716 (+) False LOC110523468
TU432381 other downstream 97065 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other downstream 97065 23838524 ~ 23843846 (+) True LOC110523468
TU433317 other downstream 946280 24687739 ~ 24776429 (+) True G381239

Expression Profile