RNA id: TU432481



Basic Information


Item Value
RNA id TU432481
length 202
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G380461
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23992079 ~ 23992280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTTGATGACATTCATGCCCACTTGAATCCTACTATTACTTTGTCTTTAATCTTTGTGGTATGATCTGCCACAATGCAGTTTCCCACATTTGAAAGCATCAACAGTGTCTTTGTGGGTGACCTCTCATGTGACCTCTCTGTGTTCACATCTGCTTGTAAGAAGATTCATCTGGTATGAGTGGTACAACACTGGTGGTACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU432477 lncRNA upstream 9406 23982451 ~ 23982673 (+) True G380457
TU432454 lncRNA upstream 9738 23954222 ~ 23982341 (+) True G380434
TU432453 lncRNA upstream 38725 23953059 ~ 23953354 (+) True G380433
TU432451 lncRNA upstream 43283 23948593 ~ 23948796 (+) True G380431
TU432387 lncRNA upstream 184143 23807214 ~ 23807936 (+) True G380372
TU432497 lncRNA downstream 31313 24023593 ~ 24024258 (+) True G380477
TU432501 lncRNA downstream 36696 24028976 ~ 24029576 (+) True G380481
TU432502 lncRNA downstream 37853 24030133 ~ 24030373 (+) True G380482
TU432544 lncRNA downstream 128587 24120867 ~ 24121726 (+) False G380524
TU432545 lncRNA downstream 129124 24121404 ~ 24121726 (+) True G380524
XM_021602183.2 mRNA upstream 62414 23906231 ~ 23929665 (+) True LOC110523473
XM_021602182.2 mRNA upstream 86078 23896074 ~ 23906001 (+) False LOC110523472
XM_021602181.2 mRNA upstream 86078 23896075 ~ 23906001 (+) True LOC110523472
XM_021601275.2 mRNA upstream 108738 23873604 ~ 23883341 (+) False oclna
XM_036977100.1 mRNA downstream 47865 24040145 ~ 24075381 (+) False zmp:0000000846
XM_021602184.2 mRNA downstream 47867 24040147 ~ 24081954 (+) False zmp:0000000846
XM_021602185.2 mRNA downstream 47868 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602186.2 mRNA downstream 47868 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602187.2 mRNA downstream 47868 24040148 ~ 24081954 (+) False zmp:0000000846
TU432381 other upstream 147734 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 148233 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 148368 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 149363 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 250620 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 695459 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 1233162 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 2182665 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2445339 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2445379 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile