RNA id: TU432983



Basic Information


Item Value
RNA id TU432983
length 271
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G380930
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24230152 ~ 24230422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GtatgcagacctgggttcaaataatatttgttttctttcaaatacttaagCTGAGCTtcattgagcttgcctggtgGAATTAGACCAATGGaattgctgccatgttgtgttgctcccatgttgttgtcatgtggtgttgctaccatgctatgttgtcatgtcttgctgccatgctatgttgttgtcttaggtctctctttatgtagtgttgtggtgtctctcttgttgtgatgtgttttttgtcctatatttttatttttaatcccagcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU432958 lncRNA upstream 15115 24214786 ~ 24215037 (+) True G380905
TU432544 lncRNA upstream 108426 24120867 ~ 24121726 (+) False G380524
TU432545 lncRNA upstream 108426 24121404 ~ 24121726 (+) True G380524
TU432502 lncRNA upstream 199779 24030133 ~ 24030373 (+) True G380482
TU432501 lncRNA upstream 200576 24028976 ~ 24029576 (+) True G380481
TU432999 lncRNA downstream 11183 24241605 ~ 24241809 (+) True G380946
TU433066 lncRNA downstream 93934 24324356 ~ 24324600 (+) True G381009
TU433076 lncRNA downstream 103113 24333535 ~ 24333734 (+) True G381019
TU433102 lncRNA downstream 136417 24366839 ~ 24367046 (+) True G381045
TU433104 lncRNA downstream 139035 24369457 ~ 24369735 (+) True G381047
XM_021602186.2 mRNA upstream 148198 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602200.2 mRNA downstream 223650 24454072 ~ 24473605 (+) False LOC110523479
XM_036977107.1 mRNA downstream 224231 24454653 ~ 24473605 (+) False LOC110523479
XM_021602201.2 mRNA downstream 224232 24454654 ~ 24473605 (+) False LOC110523479
XM_021602216.2 mRNA downstream 405281 24635703 ~ 24644012 (+) True LOC110523483
trnaa-ugc-9 mRNA downstream 474293 24704715 ~ 24704786 (+) True trnaa-ugc-9
TU432381 other upstream 385807 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 386306 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 386441 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 387436 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 488693 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 457317 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 995020 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 1944523 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2207197 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2207237 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile