RNA id: TCONS_00033648


Basic Information

Item Value
RNA id TCONS_00033648
length 3220
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_015814
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43653620 ~ 43659284 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccagcacaaaaaaaatgtttctgaagacaatcacctttaatgcatttttaattggtaaaataaaaatgcacataaaaccCATCATTCCATAAATGTTACCTTGTTCACTTTATATAGATCAGCTCATCTGTCAAACTGAATCAAATTTTTAACAGTACCATGGTATATAGCCTACGTGCTGAATATAAATGGATGAAAAAACAAACTACACAGCTAAACTGTGTAAAGCGCAGACATTTCTAAaagtcatttaataataaaatctcTTACGTTTGATTATAAGGCATGCTGactcacaaaaacaaacctgATAACAATGCAGTCCAGTGTTTTGGGTtctttatttcaataaataactaGTAGAAACAAAAGACAGTGGGCttgatgcaaaaatgaaaaaggcACTTACAATGCAAATTGTGTGTAACATGATTACAATTTTACAAGCTCTGAAGATAAAAAAGGGAGAaacatgtaattatttttttataacactgatctttaccaaccaaccaaccataatCTAATGCAGTTAAAATGGACAAATTCAATTATAAAAAGAAATGTGAAACAACTCCACTCACGGAGAGACTAAAAGAAACGACAGTAAAATATAGTTCTTGCACAGTAGACGTAAATATTTGGCATCAGTGAAAGAGAAAAATCCAGGACCTGAGTTTCATTCCTCAttctttaaacaaatgtaaaacctGAAGATCTTTTCATATGACATTACACTAATGTCTGCACTAACCACAAGTTGATTGTTTCATTCACAGACAGTGGCCAAAAAAATCCCTCTGACATTTTCTGAACAACTCAGATGTTGCAAAGCGGAAGGCATTTCAATCAAACACTCAAAACCTTTACAACAGTTGGTTTGCATGATACTAAATCTGTCCATTTTAGATTCAAAATCATTAGTAAGCgcaataaaaaaaagtcacaaaaccATTTGACTCGCAGACCAAAGCAAGGCGatgtaagcacacacacacatccagacTCGCATAGGCCTAAGCATTATAGACTGGACTCAAATCAGCCAGAATTATGCAGACGACATATGCAGAGTCTACATGAGAAAAGCACCATGTGTACAAACAGCAGTGGTCCGCTACAGTTACCTACTATACCAGTGACAGGACAccccatccattcattaattcacaAAGTTTCCTGTACCATCAAACGACACAAACTGATTCGATTACTTAACTAAATACTGAATAAAGCAGTGGATATCCATTAAAGGAACACTgctcttcttttgtttttgttttttttgaaaaAGTCTTGATTTACACGTCCCCTAGAGTTAAGTaggtgagttttaccatttttaaatccattcagtcaatctccgagtctggcaggagcacatttagcttagcataaatcattgaatcagattagaccattagcatctcatttaaaattgtaaaagagttttgatatttgctatttaaagctaGACTCGTCTGTAGTTCCAACATCTACAAAGTCTGATGGGAAATGGAAAGTAGCTATTTTCTAGAGGCTGGTATGTCTAGGAACCATAATCTcgttctggtgtaataatcaggGAACTTTGCTGCCATATCATGGCTACAGCAGgcacaatgatattatacAAAACCTGAAAATAGCCCAAAGCAAGCTACTTatcattttccatcagtcttatTACACAGCGTCACTACAAAAAGAGTCaagttttaaataggaaaaatgaCTTTTTGACTTTGAGCGAGATGCTACTGGTCTAATCCgactcaatgatttatgctaagctaaaagcgctcctgccagacccaggaattggctgaatggattcaataaGGTAAAACTTAGTTGTGTAACACTTGGAGGATTGTAAAAAAGCCTATTTCCCCCCAAAAAGCGGAGTGTTCCTTGAATATTTATCTATTGCGTCTCAAACAACATTCTTAATGCAGACTTGACCTTATCTTACCTATAAAACCCCTGTCATCTATCCCAATGTGACGGCTTTTAACATTCAAAAAAACAAGGCAGATCTGTGGCTAAAAATCAAAATTgaacattggattttttttttttgcataaaaaagtaaaaactcaaGTTTATACATACTGTACAGTTTCTAAAGGATGCATAGAAACACAGGTTAATTGATTATACTGAACAGTGGCAAATGCACAGCCGATAggtggttttaaaaaaatgcaaaaaaaattaaaaagttaaagaaACAAAGTGAACTTCAACGCTTCTGTTCCTCTTGAATTGTTCTGCATACAGTGTAGATTGGGGATAGACACGTTCGTCCATTATTTGCCCTCATATTTAGGGTTGACCACCGTTGTCACAGCGCTCTTGTAAATGGGGTTTTCACCCTAAAGAACAACAAAAAGAGacgaaaaataaaatacaaacaacatAATCGTCAGGGTTAGCACACTGCACTGCAAATAGATTAAACAATGGTTAAAGCAAGCATTCCTAAAGGCACAAAACCAAGCACAAACACTGTACTTGCAGTCATCTTGTATACgcattcatttaaatactagtgCATTTAGTATCGACAATCGTTTGAATTACACTCTTTTTAAATGACATGCGGGTGAATAAATcttttttcttcatttgtttgggtaaacACTCTCATCACTTTGTGGCTTGTGATAATTAGTGAATTAGACAGGACATTTTACACACTGTTCACAAGGCTGAGGTTGTTGCTGAAGAACCAGAAAGGTGAACAGACagaaatgcaaataaacaaaaggCCATGCGAGGAGGAGAGAGGAAGAGTACAGACTCAGAGCGCGACGCCTTTATTTCCATAACTTGGATTCTGGAATTTATTAATGGGGCTCTTGTATATGGGATTCTCTTGCTAGATATGACCAGAAGAAAAAGTATGAAGAGAGGaggagaaaacaagacaaaatatgaCAGAATGAGAAAAGCAGAATTTAAGTAAAGAAAGCAAGAAACTGAAGTGATTAAGAAAGAAGCTTTTACACAATGACATGTTGACATTATGACATTTAGATTGACAGTGATgcaatgacatttatttattgtaaatcaaTAAGTTTCTATGTTCACTGATtctaattaatcatttaacaagCACTGTAGCTGCATGACTGACCATATATGAATGTGTTATCagtaaaacaaaactgaaaaattgcTTAGTTTGGTATCTGCAAATCAACTTTaccc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033642 lncRNA upstream 491376 43138555 ~ 43163518 (+) True XLOC_015811
TCONS_00033641 lncRNA upstream 644513 42972927 ~ 43010381 (+) True XLOC_015809
TCONS_00031426 lncRNA upstream 873640 42773384 ~ 42781254 (+) True XLOC_015807
TCONS_00031425 lncRNA upstream 880378 42773349 ~ 42774516 (+) False XLOC_015807
TCONS_00033296 lncRNA upstream 1008900 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00033653 lncRNA downstream 276092 43935376 ~ 43936132 (+) True XLOC_015819
TCONS_00031448 lncRNA downstream 701682 44360966 ~ 44361611 (+) True XLOC_015820
TCONS_00031449 lncRNA downstream 713937 44373221 ~ 44386693 (+) True XLOC_015821
TCONS_00033654 lncRNA downstream 723888 44383172 ~ 44385238 (+) True XLOC_015822
TCONS_00033655 lncRNA downstream 736030 44395314 ~ 44400668 (+) True XLOC_015823
TCONS_00031436 mRNA upstream 147616 43469241 ~ 43507278 (+) True XLOC_015813
TCONS_00031435 mRNA upstream 161332 43469241 ~ 43493562 (+) False XLOC_015813
TCONS_00031432 mRNA upstream 265646 43204977 ~ 43389248 (+) False XLOC_015812
TCONS_00031431 mRNA upstream 324835 43204977 ~ 43330059 (+) False XLOC_015812
TCONS_00031437 mRNA downstream 89937 43749221 ~ 43797218 (+) False XLOC_015815
TCONS_00031438 mRNA downstream 91615 43750899 ~ 43788045 (+) False XLOC_015815
TCONS_00031439 mRNA downstream 95990 43755274 ~ 43784018 (+) True XLOC_015815
TCONS_00031440 mRNA downstream 192699 43851983 ~ 43871387 (+) False XLOC_015816
TCONS_00031441 mRNA downstream 205291 43864575 ~ 43866154 (+) True XLOC_015816
TCONS_00031434 other upstream 351812 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031429 other upstream 655975 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031414 other upstream 1067859 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031413 other upstream 1231095 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031377 other upstream 2618703 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031447 other downstream 693389 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031458 other downstream 905094 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031468 other downstream 1264515 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031495 other downstream 1905929 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031505 other downstream 2629576 46288860 ~ 46288996 (+) True XLOC_015865