RNA id: TU433104



Basic Information


Item Value
RNA id TU433104
length 279
lncRNA type intronic
GC content 0.46
exon number 1
gene id G381047
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24369457 ~ 24369735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcccaacacacctccaggctatgtaagggctatttgaccaaggagagtgatggagtgctgcatcagatgacctggcatccaaaatcacccgacctcaacctaattgagatggtttgggatgagttggactgcagagtgaaggaaaagcagtacTCAGCATGTGGAAACCCCTTCAAGActgatggaaaagcattccaggtgaagctggttgagagaatgccaagagcttTCAAAGCTGTCAATcaacgcaaagggtggctacttttaagaatataaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU433102 lncRNA upstream 2411 24366839 ~ 24367046 (+) True G381045
TU433076 lncRNA upstream 35723 24333535 ~ 24333734 (+) True G381019
TU433066 lncRNA upstream 44857 24324356 ~ 24324600 (+) True G381009
TU432999 lncRNA upstream 127648 24241605 ~ 24241809 (+) True G380946
TU432983 lncRNA upstream 139035 24230152 ~ 24230422 (+) True G380930
TU433105 lncRNA downstream 587 24370322 ~ 24370555 (+) True G381048
TU433107 lncRNA downstream 2292 24372027 ~ 24372264 (+) True G381050
TU433108 lncRNA downstream 2628 24372363 ~ 24372591 (+) True G381051
TU433109 lncRNA downstream 5450 24375185 ~ 24375530 (+) True G381052
TU433114 lncRNA downstream 13911 24383646 ~ 24383913 (+) True G381057
XM_021602186.2 mRNA upstream 287503 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602200.2 mRNA downstream 84337 24454072 ~ 24473605 (+) False LOC110523479
XM_036977107.1 mRNA downstream 84918 24454653 ~ 24473605 (+) False LOC110523479
XM_021602201.2 mRNA downstream 84919 24454654 ~ 24473605 (+) False LOC110523479
XM_021602216.2 mRNA downstream 265968 24635703 ~ 24644012 (+) True LOC110523483
trnaa-ugc-9 mRNA downstream 334980 24704715 ~ 24704786 (+) True trnaa-ugc-9
TU432381 other upstream 525112 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 525611 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 525746 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 526741 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 627998 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 318004 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 855707 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 1805210 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2067884 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2067924 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile