RNA id: TU433108



Basic Information


Item Value
RNA id TU433108
length 229
lncRNA type intronic
GC content 0.38
exon number 1
gene id G381051
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24372363 ~ 24372591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATTAATGTGGATCTGATATCATGATATGACGGGGAACAGATATGATGGGGACCTGATATTATGACAGTTTACCAAACCAGCACAAACCCAAATGATTCAACTGATTGACTGATAATTAAGCTGTTGGGTCCCCAGAAcccaggattgggaaacactaTGAGGACCAAACATTGACCATACTGTGATCTTTCGTATTTTTATTGacaattattttaccaggtaagttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU433107 lncRNA upstream 99 24372027 ~ 24372264 (+) True G381050
TU433105 lncRNA upstream 1808 24370322 ~ 24370555 (+) True G381048
TU433104 lncRNA upstream 2628 24369457 ~ 24369735 (+) True G381047
TU433102 lncRNA upstream 5317 24366839 ~ 24367046 (+) True G381045
TU433076 lncRNA upstream 38629 24333535 ~ 24333734 (+) True G381019
TU433109 lncRNA downstream 2594 24375185 ~ 24375530 (+) True G381052
TU433114 lncRNA downstream 11055 24383646 ~ 24383913 (+) True G381057
TU433130 lncRNA downstream 17677 24390268 ~ 24390699 (+) True G381067
TU433132 lncRNA downstream 20355 24392946 ~ 24393215 (+) True G381069
TU433134 lncRNA downstream 23210 24395801 ~ 24396093 (+) True G381071
XM_021602186.2 mRNA upstream 290409 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602200.2 mRNA downstream 81481 24454072 ~ 24473605 (+) False LOC110523479
XM_036977107.1 mRNA downstream 82062 24454653 ~ 24473605 (+) False LOC110523479
XM_021602201.2 mRNA downstream 82063 24454654 ~ 24473605 (+) False LOC110523479
XM_021602216.2 mRNA downstream 263112 24635703 ~ 24644012 (+) True LOC110523483
trnaa-ugc-9 mRNA downstream 332124 24704715 ~ 24704786 (+) True trnaa-ugc-9
TU432381 other upstream 528018 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 528517 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 528652 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 529647 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 630904 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 315148 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 852851 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 1802354 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2065028 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2065068 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile