RNA id: TU433109



Basic Information


Item Value
RNA id TU433109
length 346
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G381052
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24375185 ~ 24375530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCATGGGGGGACAGAGTGAGGAATCATGGGATGTCATGACCCATAAGTACTCACCAGACTAGAGGTGAGTGAGGGGGCGGACTTCCCCAGGGTGGTGGAGCACATCCGCACCAGGTTGGAGGTCTCTGAGGGGGTCTGCCATGCCTGCTGGGGGGACACATAGGGCAGCAGGTACTTTCCTATAGGACAAGACACACAACAGTAGTTAATCTATAGAGAGAAGATACTTTTCCTGTAGGACAAGACAGACAACTAGTGTTTCCTCTATATTCATTCAGCAGCAGTGTTGCCACCACTCCCAAAACGTTCTGTGTAAACTTCAACTACTAAAATCAGATAtgaagta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU433108 lncRNA upstream 2594 24372363 ~ 24372591 (+) True G381051
TU433107 lncRNA upstream 2921 24372027 ~ 24372264 (+) True G381050
TU433105 lncRNA upstream 4630 24370322 ~ 24370555 (+) True G381048
TU433104 lncRNA upstream 5450 24369457 ~ 24369735 (+) True G381047
TU433102 lncRNA upstream 8139 24366839 ~ 24367046 (+) True G381045
TU433114 lncRNA downstream 8116 24383646 ~ 24383913 (+) True G381057
TU433130 lncRNA downstream 14738 24390268 ~ 24390699 (+) True G381067
TU433132 lncRNA downstream 17416 24392946 ~ 24393215 (+) True G381069
TU433134 lncRNA downstream 20271 24395801 ~ 24396093 (+) True G381071
TU433135 lncRNA downstream 20709 24396239 ~ 24396493 (+) True G381072
XM_021602186.2 mRNA upstream 293231 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602200.2 mRNA downstream 78542 24454072 ~ 24473605 (+) False LOC110523479
XM_036977107.1 mRNA downstream 79123 24454653 ~ 24473605 (+) False LOC110523479
XM_021602201.2 mRNA downstream 79124 24454654 ~ 24473605 (+) False LOC110523479
XM_021602216.2 mRNA downstream 260173 24635703 ~ 24644012 (+) True LOC110523483
trnaa-ugc-9 mRNA downstream 329185 24704715 ~ 24704786 (+) True trnaa-ugc-9
TU432381 other upstream 530840 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 531339 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 531474 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 532469 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 633726 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 312209 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 849912 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 1799415 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2062089 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2062129 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile