RNA id: TU433130



Basic Information


Item Value
RNA id TU433130
length 432
lncRNA type intronic
GC content 0.45
exon number 1
gene id G381067
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24390268 ~ 24390699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acaactctccttccgtggcctccaactgctcttaaatacaagtaaaactaaatgcatgctcttcaaccgattgctgcctgcacctgcccaccccgtccagcatcactactctggacggttcgggtttagaatatgtggacaactacaaatacctaggtgtctggttagactgtaaactctctttccagactcacattaaacatctccaatccaaaatgaaatctagaatcggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacataccctcgtaaaactgaccatcctaccgatcctcgacttcagcgatgtcatttacaaaatagcctccaacactctactcaacaaattggatgcagtctatcacagtgccatccgttttgtcaccaaagccccatatactacccaccactgctacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU433114 lncRNA upstream 6355 24383646 ~ 24383913 (+) True G381057
TU433109 lncRNA upstream 14738 24375185 ~ 24375530 (+) True G381052
TU433108 lncRNA upstream 17677 24372363 ~ 24372591 (+) True G381051
TU433107 lncRNA upstream 18004 24372027 ~ 24372264 (+) True G381050
TU433105 lncRNA upstream 19713 24370322 ~ 24370555 (+) True G381048
TU433132 lncRNA downstream 2247 24392946 ~ 24393215 (+) True G381069
TU433134 lncRNA downstream 5102 24395801 ~ 24396093 (+) True G381071
TU433135 lncRNA downstream 5540 24396239 ~ 24396493 (+) True G381072
TU433122 lncRNA downstream 42103 24432802 ~ 24476098 (+) False LOC110523479
TU433181 lncRNA downstream 74414 24465113 ~ 24500212 (+) False G381115
XM_021602186.2 mRNA upstream 308314 24040148 ~ 24081954 (+) False zmp:0000000846
XM_021602200.2 mRNA downstream 63373 24454072 ~ 24473605 (+) False LOC110523479
XM_036977107.1 mRNA downstream 63954 24454653 ~ 24473605 (+) False LOC110523479
XM_021602201.2 mRNA downstream 63955 24454654 ~ 24473605 (+) False LOC110523479
XM_021602216.2 mRNA downstream 245004 24635703 ~ 24644012 (+) True LOC110523483
trnaa-ugc-9 mRNA downstream 314016 24704715 ~ 24704786 (+) True trnaa-ugc-9
TU432381 other upstream 545923 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 546422 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 546557 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 547552 23838524 ~ 23842716 (+) False LOC110523468
TU432349 other upstream 648809 23740434 ~ 23741459 (+) True G380340
TU433317 other downstream 297040 24687739 ~ 24776429 (+) True G381239
TU434321 other downstream 834743 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 1784246 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 2046920 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 2046960 26437659 ~ 26460535 (+) True LOC110522865

Expression Profile