RNA id: TU433388


Basic Information

Item Value
RNA id TU433388
length 359
lncRNA type read_through
GC content 0.49
exon number 3
gene id G381305
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24817386 ~ 24888977 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcattgaaaacatcagaagttcttcaaaggaaaaactgaacatttgctatctgagagtctcctcattgaaaacatctgaagttcttcaaagaggacctgagccctagcacCATTGCCTCAGgcctacctggcctgatgactccttgctgtccccagtccacctggtcatgttgctactccagtttcaactgttctgcctgcggctaaggAACCCGATCacttcaccagacgtgctaccttgtcccggacctgctgttttcgactctttctctctaccgcacctgctgtctcgaactCTGAATGCCCAGCTATGAAAATCCAACTGACAGGTtgactgacctgttgcaccctttcAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU433311 lncRNA upstream 137688 24679450 ~ 24679698 (+) True G381234
TU433259 lncRNA upstream 171516 24645017 ~ 24645870 (+) True G381190
TU433262 lncRNA upstream 172527 24644128 ~ 24644859 (+) True G381191
TU433242 lncRNA upstream 204947 24573470 ~ 24612439 (+) True G381174
TU433169 lncRNA upstream 306515 24507603 ~ 24510871 (+) True G381104
TU433483 lncRNA downstream 39232 24928209 ~ 24930197 (+) True G381396
TU433597 lncRNA downstream 194390 25083367 ~ 25124168 (+) True G381505
TU434252 lncRNA downstream 284498 25173475 ~ 25173703 (+) True G382117
TU434253 lncRNA downstream 285568 25174545 ~ 25174812 (+) True G382118
TU434309 lncRNA downstream 328136 25217113 ~ 25217367 (+) True G382174
trnaa-ugc-10 mRNA upstream 97955 24719360 ~ 24719431 (+) True trnaa-ugc-10
trnaa-ugc-9 mRNA upstream 112600 24704715 ~ 24704786 (+) True trnaa-ugc-9
XM_021602216.2 mRNA upstream 173374 24635703 ~ 24644012 (+) True LOC110523483
XM_021602200.2 mRNA upstream 343781 24454072 ~ 24473605 (+) False LOC110523479
XM_036977107.1 mRNA upstream 343781 24454653 ~ 24473605 (+) False LOC110523479
XM_021602226.2 mRNA downstream 530728 25419705 ~ 25424226 (+) True aqp3b
XM_021602232.2 mRNA downstream 584936 25473913 ~ 25482789 (+) True LOC110523493
XM_036977129.1 mRNA downstream 639932 25528909 ~ 25561013 (+) False LOC110523494
XM_036977139.1 mRNA downstream 639951 25528928 ~ 25561013 (+) False LOC110523494
XM_036977121.1 mRNA downstream 639992 25528969 ~ 25561013 (+) False LOC110523494
TU433317 other upstream 40957 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 973041 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 973540 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 973675 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other upstream 974670 23838524 ~ 23842716 (+) False LOC110523468
TU434321 other downstream 336465 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 1285968 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 1548642 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 1548682 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 1772861 26661838 ~ 26663613 (+) True G383794

Expression Profile