RNA id: TU434252


Basic Information

Item Value
RNA id TU434252
length 229
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G382117
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25173475 ~ 25173703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGAAGACTTTCCTACCAGTTTGCTGTGGTACACGAGCTGAAATTCGCACCAATGTGGGCAGAAAAAGAAAAGGCCAGCTCGGAGTGGTTTACAGGCTTCTTAAAGCAGCACCCAAAGAAAGAGAAAGCCAGAGGCAACTACCCTTGCCAGGGCAAGTAGCTTCAACAGACAAAATGTTAATACTTTCTTTGACAATGTAGCAGAAGTGCTACAGAGATATCAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU433597 lncRNA upstream 49307 25083367 ~ 25124168 (+) True G381505
TU433483 lncRNA upstream 243278 24928209 ~ 24930197 (+) True G381396
TU433388 lncRNA upstream 284498 24817386 ~ 24888977 (+) True G381305
TU433311 lncRNA upstream 493777 24679450 ~ 24679698 (+) True G381234
TU433259 lncRNA upstream 527605 24645017 ~ 24645870 (+) True G381190
TU434253 lncRNA downstream 842 25174545 ~ 25174812 (+) True G382118
TU434309 lncRNA downstream 43410 25217113 ~ 25217367 (+) True G382174
TU434329 lncRNA downstream 56849 25230552 ~ 25230781 (+) True G382194
TU434382 lncRNA downstream 92949 25266652 ~ 25266860 (+) True G382247
TU434441 lncRNA downstream 129276 25302979 ~ 25303211 (+) True G382305
trnaa-ugc-10 mRNA upstream 454044 24719360 ~ 24719431 (+) True trnaa-ugc-10
trnaa-ugc-9 mRNA upstream 468689 24704715 ~ 24704786 (+) True trnaa-ugc-9
XM_021602216.2 mRNA upstream 529463 24635703 ~ 24644012 (+) True LOC110523483
XM_036977107.1 mRNA upstream 699870 24454653 ~ 24473605 (+) False LOC110523479
XM_021602226.2 mRNA downstream 246002 25419705 ~ 25424226 (+) True aqp3b
XM_021602232.2 mRNA downstream 300210 25473913 ~ 25482789 (+) True LOC110523493
XM_036977129.1 mRNA downstream 355206 25528909 ~ 25561013 (+) False LOC110523494
XM_036977139.1 mRNA downstream 355225 25528928 ~ 25561013 (+) False LOC110523494
XM_036977121.1 mRNA downstream 355266 25528969 ~ 25561013 (+) False LOC110523494
TU433317 other upstream 397046 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 1329130 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 1329629 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 1329764 23838524 ~ 23843711 (+) False LOC110523468
TU434321 other downstream 51739 25225442 ~ 25225730 (+) True G382186
TU434985 other downstream 1001242 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 1263916 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 1263956 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 1488135 26661838 ~ 26663613 (+) True G383794

Expression Profile