RNA id: TU434329


Basic Information

Item Value
RNA id TU434329
length 230
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G382194
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25230552 ~ 25230781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggattttttactctgattaaatgtcagtaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtatgtgtatgaGTCCATGCAGATGCCCCcgtatgagtgtgtttgtgtgcatgccttcatgcatgtgtgtgcgtgtgtgcagtgtgtgcacCACAATTACACATTATTCTCCTGGAGGATGTCAGGTGACTCTTAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434309 lncRNA upstream 13185 25217113 ~ 25217367 (+) True G382174
TU434253 lncRNA upstream 55740 25174545 ~ 25174812 (+) True G382118
TU434252 lncRNA upstream 56849 25173475 ~ 25173703 (+) True G382117
TU433597 lncRNA upstream 106384 25083367 ~ 25124168 (+) True G381505
TU433483 lncRNA upstream 300355 24928209 ~ 24930197 (+) True G381396
TU434382 lncRNA downstream 35871 25266652 ~ 25266860 (+) True G382247
TU434441 lncRNA downstream 72198 25302979 ~ 25303211 (+) True G382305
TU434443 lncRNA downstream 74512 25305293 ~ 25305510 (+) True G382307
TU434447 lncRNA downstream 77193 25307974 ~ 25310280 (+) True G382311
TU434451 lncRNA downstream 80558 25311339 ~ 25311826 (+) True G382315
trnaa-ugc-10 mRNA upstream 511121 24719360 ~ 24719431 (+) True trnaa-ugc-10
trnaa-ugc-9 mRNA upstream 525766 24704715 ~ 24704786 (+) True trnaa-ugc-9
XM_021602216.2 mRNA upstream 586540 24635703 ~ 24644012 (+) True LOC110523483
XM_036977107.1 mRNA upstream 756947 24454653 ~ 24473605 (+) False LOC110523479
XM_021602226.2 mRNA downstream 188924 25419705 ~ 25424226 (+) True aqp3b
XM_021602232.2 mRNA downstream 243132 25473913 ~ 25482789 (+) True LOC110523493
XM_036977129.1 mRNA downstream 298128 25528909 ~ 25561013 (+) False LOC110523494
XM_036977139.1 mRNA downstream 298147 25528928 ~ 25561013 (+) False LOC110523494
XM_036977121.1 mRNA downstream 298188 25528969 ~ 25561013 (+) False LOC110523494
TU434321 other upstream 4822 25225442 ~ 25225730 (+) True G382186
TU433317 other upstream 454123 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 1386207 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 1386706 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 1386841 23838524 ~ 23843711 (+) False LOC110523468
TU434985 other downstream 944164 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 1206838 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 1206878 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 1431057 26661838 ~ 26663613 (+) True G383794
TU437362 other downstream 2444571 27675352 ~ 27683393 (+) True LOC110522888

Expression Profile