RNA id: TU434443


Basic Information

Item Value
RNA id TU434443
length 218
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G382307
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25305293 ~ 25305510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATATACagcacatttggaaagtatttagacccctcaactttttccacattttgttaagttacagccttattctaaaatggattcaatttgttttttcccctcacaaatctacacacaataccccataactacaatgcaaaaacaggtttttagaaatgtttgcaaaaaactgaaacatcacatttacataagttttcagaccctttcctcaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434441 lncRNA upstream 2082 25302979 ~ 25303211 (+) True G382305
TU434382 lncRNA upstream 38433 25266652 ~ 25266860 (+) True G382247
TU434329 lncRNA upstream 74512 25230552 ~ 25230781 (+) True G382194
TU434309 lncRNA upstream 87926 25217113 ~ 25217367 (+) True G382174
TU434253 lncRNA upstream 130481 25174545 ~ 25174812 (+) True G382118
TU434447 lncRNA downstream 2464 25307974 ~ 25310280 (+) True G382311
TU434451 lncRNA downstream 5829 25311339 ~ 25311826 (+) True G382315
TU434476 lncRNA downstream 31037 25336547 ~ 25336887 (+) True G382340
TU434477 lncRNA downstream 32595 25338105 ~ 25338335 (+) True G382341
TU434623 lncRNA downstream 130028 25435538 ~ 25435807 (+) True G382476
trnaa-ugc-10 mRNA upstream 585862 24719360 ~ 24719431 (+) True trnaa-ugc-10
trnaa-ugc-9 mRNA upstream 600507 24704715 ~ 24704786 (+) True trnaa-ugc-9
XM_021602216.2 mRNA upstream 661281 24635703 ~ 24644012 (+) True LOC110523483
XM_036977107.1 mRNA upstream 831688 24454653 ~ 24473605 (+) False LOC110523479
XM_021602226.2 mRNA downstream 114195 25419705 ~ 25424226 (+) True aqp3b
XM_021602232.2 mRNA downstream 168403 25473913 ~ 25482789 (+) True LOC110523493
XM_036977129.1 mRNA downstream 223399 25528909 ~ 25561013 (+) False LOC110523494
XM_036977139.1 mRNA downstream 223418 25528928 ~ 25561013 (+) False LOC110523494
XM_036977121.1 mRNA downstream 223459 25528969 ~ 25561013 (+) False LOC110523494
TU434321 other upstream 79563 25225442 ~ 25225730 (+) True G382186
TU433317 other upstream 528864 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 1460948 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 1461447 23838524 ~ 23843846 (+) True LOC110523468
TU432380 other upstream 1462577 23838524 ~ 23842716 (+) False LOC110523468
TU434985 other downstream 869435 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 1132109 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 1132149 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 1356328 26661838 ~ 26663613 (+) True G383794
TU437362 other downstream 2369842 27675352 ~ 27683393 (+) True LOC110522888

Expression Profile