RNA id: TU434647


Basic Information

Item Value
RNA id TU434647
length 223
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G382497
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25452872 ~ 25453094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgcgacctgaccaagataaagcaaagcagtgcgacaaaaacaacaacacagagttacacatgggataaacaaacgtacagtcaataacacaatagaaaatctgtatacagtgtgtgcaaattaagtaaggaggtaaggcaatgaataggccatagtggcaaagtaattacaattcagcaattaacactggagtgatagatgtgcagatgtggatgtgcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434625 lncRNA upstream 3302 25442759 ~ 25449570 (+) True G382478
TU434623 lncRNA upstream 17065 25435538 ~ 25435807 (+) True G382476
TU434477 lncRNA upstream 114537 25338105 ~ 25338335 (+) True G382341
TU434476 lncRNA upstream 115985 25336547 ~ 25336887 (+) True G382340
TU434451 lncRNA upstream 141046 25311339 ~ 25311826 (+) True G382315
TU434654 lncRNA downstream 4166 25457260 ~ 25457661 (+) True G382504
TU434663 lncRNA downstream 82686 25535780 ~ 25540245 (+) True LOC110523494
TU434757 lncRNA downstream 171019 25624113 ~ 25624865 (+) True G382598
TU434832 lncRNA downstream 322506 25775600 ~ 25775817 (+) True G382670
TU434835 lncRNA downstream 329302 25782396 ~ 25782611 (+) True G382673
XM_021602226.2 mRNA upstream 28646 25419705 ~ 25424226 (+) True aqp3b
trnaa-ugc-10 mRNA upstream 733441 24719360 ~ 24719431 (+) True trnaa-ugc-10
trnaa-ugc-9 mRNA upstream 748086 24704715 ~ 24704786 (+) True trnaa-ugc-9
XM_021602216.2 mRNA upstream 808860 24635703 ~ 24644012 (+) True LOC110523483
XM_021602201.2 mRNA upstream 979267 24454654 ~ 24473605 (+) False LOC110523479
XM_021602232.2 mRNA downstream 20819 25473913 ~ 25482789 (+) True LOC110523493
XM_036977129.1 mRNA downstream 75815 25528909 ~ 25561013 (+) False LOC110523494
XM_036977139.1 mRNA downstream 75834 25528928 ~ 25561013 (+) False LOC110523494
XM_036977121.1 mRNA downstream 75875 25528969 ~ 25561013 (+) False LOC110523494
XM_036977123.1 mRNA downstream 75875 25528969 ~ 25561013 (+) False LOC110523494
TU434321 other upstream 227142 25225442 ~ 25225730 (+) True G382186
TU433317 other upstream 676443 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 1608527 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 1609026 23838524 ~ 23843846 (+) True LOC110523468
TU432380 other upstream 1610156 23838524 ~ 23842716 (+) False LOC110523468
TU434985 other downstream 721851 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 984525 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 984565 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 1208744 26661838 ~ 26663613 (+) True G383794
TU437362 other downstream 2222258 27675352 ~ 27683393 (+) True LOC110522888

Expression Profile