RNA id: TU434835


Basic Information

Item Value
RNA id TU434835
length 216
lncRNA type intronic
GC content 0.43
exon number 1
gene id G382673
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25782396 ~ 25782611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACACTCAGAGCTGCAACAAGcgctgcagcagtaatgaatgaggaGGAAAGTGTATCTATAGGCGTTGTTGTTATAATTAGCcgcttgggtcttttttaatgTCGAGGAATATTttactttctctgttcataggagtaacaacatgaatgtgGTGCGACTTGAgattcgccatcagctggaacgGTTGgttccctttttggtcagtgtcagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434832 lncRNA upstream 6579 25775600 ~ 25775817 (+) True G382670
TU434757 lncRNA upstream 157531 25624113 ~ 25624865 (+) True G382598
TU434663 lncRNA upstream 242151 25535780 ~ 25540245 (+) True LOC110523494
TU434654 lncRNA upstream 324735 25457260 ~ 25457661 (+) True G382504
TU434647 lncRNA upstream 329302 25452872 ~ 25453094 (+) True G382497
TU434815 lncRNA downstream 10173 25792784 ~ 25793763 (+) True cacna1b
TU434814 lncRNA downstream 11490 25794101 ~ 25795410 (+) True G382652
TU434853 lncRNA downstream 24126 25806737 ~ 25815563 (+) True G382689
TU434966 lncRNA downstream 197790 25980401 ~ 25980628 (+) True G382795
TU435069 lncRNA downstream 332414 26115025 ~ 26471390 (+) True G382895
XM_036977136.1 mRNA upstream 221383 25533124 ~ 25561013 (+) False LOC110523494
XM_036977140.1 mRNA downstream 87132 25869743 ~ 25938520 (+) True LOC110523500
XM_021601319.2 mRNA downstream 169483 25952094 ~ 25955508 (+) True LOC110522854
XM_021602252.2 mRNA downstream 213037 25995648 ~ 26149621 (+) True whrna
XR_005051693.1 mRNA downstream 379472 26162083 ~ 26166903 (+) True LOC118964579
XR_005051699.1 mRNA downstream 392273 26174884 ~ 26186709 (+) False LOC110523503
TU434321 other upstream 556666 25225442 ~ 25225730 (+) True G382186
TU433317 other upstream 1005967 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 1938051 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 1938550 23838524 ~ 23843846 (+) True LOC110523468
TU432380 other upstream 1939680 23838524 ~ 23842716 (+) False LOC110523468
TU434985 other downstream 392334 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 655008 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 655048 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 879227 26661838 ~ 26663613 (+) True G383794
TU437362 other downstream 1892741 27675352 ~ 27683393 (+) True LOC110522888

Expression Profile