RNA id: TCONS_00031443


Basic Information

Item Value
RNA id TCONS_00031443
length 2898
RNA type mRNA
GC content 0.45
exon number 18
gene id XLOC_015817
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43894368 ~ 43918874 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTTTTGGTGTGGCCATGTTCGCTCCGGTGTGTCTCATCGAAAATGACGGATTTGGGAAGTTAAGTGTGAAGAAACAGGCAAAAGACATTCTGGATCGGATCATTGAGCCCGTGGTGGTGGTGTCTGTGGTGGGACCCCACCGTACGGGAAAGTCTTACCTTGTGAACCTCCTGGCAGGACTACAAACTGGTTTTTCTCTCGGCTACACTATTGAGTCAGAGACCAAAGGCATCTGGATGTGGTGTATCCCTCACCCGACGAAAAAAGGACACACTCTAGTGCTGCTGGATACAGAAGGATTGGGTGACGTGCAGgaGAAAGAGAAGAATGACAAATGGATCTTCTGTCTGGCTGTTCTTCTCAGCAGTGTTCTGGTGTACAACAGTTTAGGGGTCATTGATGATGAGGCAGTGGAAAAGCTGCACTATGTTACAGAGTTGCCGGAGAACATCCGAGTGAAGGCAGAAGGTGATGAAGATGAGTCTGCAGAATTCATGCATGTTTTCCCATCATTTGTCTGGGCTGTTCAGGACTTCGATCTGGAGTTTGAAATAGAGGACGAATGGATGACATCAGATGAGTATCTGGAGAGCGCACTGAAGCTTAAAAAAGGTCACTCACTTGGAACACAGCGGTATAACCTGCCACGCCGCTGTTTGTGTGAGTTTTTTGCGCAGAAGAAATGCTTTTTGTTTCCTCGACCTGCTTATCGAAAATACATGAGAAGGTTAGAGGATCTGTCTGATGAAACGCTGGATTCAAGGTTCCTTCATCAAGCACACACTTTCTGTAGTTACATTTACGATAACGCACAGCCAAAAACTGTCAGAGGACATACAATTACCGGAACAGCTCTGGGGAATCTTGCTGAGATTTACGTCGAGGCCATAAGCAGTGGAAACGttatttgtctagaaaatgcagtCGTGTCTCTGGCTAAGATCCAGAATGTTCGTGCAGTTGATCAAGCCCGGCAGATTTACAAGGAAGAGATGCTCAGGATGGCTCAGCCTCCACTGGACCCAGATCAGCTGTCTAGAATCCACACACTGGCAGAGGAGAAGGCCATCAAAGTGTTCATCAACATGTCCTTCAGTGACAAGGACCAGATCTACCAGAAAGAGCTCATGGAGAAGATTCATCATGAATATCAGCATATGTGCCTGCAGAATCATCAAGCGTTTCTCATGCAGTGTCGGAAGGTTCTGGAGTATTCGTTTTATCCACTGGAATTGAAGATTTCTGACGGATCATACCTGAGGCCTGGAGGATACAGACAATACAGAGCCTTGCTCAATCAGCTGATCAGTGATTACAGAGCAAGAACAGAGTCACAGATAAAGcatGAGGAAGCATTGTGGATGTTTTTGCAAGGAAAGGAAGATGTTGGGAATCAGATTCTACAGGCTGATGAATCTCTCAGTGCAGCGGAGCAGGAGAAAGAGGTGCAGATCTTAAAGAATGAAATACTGCAGCAGCATCAGAGAGGCCTGGAGGAGCAGAAACATTTAGAGGAGCAGATCATTCAGCAGATGAAGAGAAACCAGGAGAAAATCAGGAGAGATGATGACCAAGCCCTAAAAGCCAAACACAAGcatgaGGAAGCATCGTGGATGATTTGGAAAGGAAATAAAGATGTTGGGAATAAGATTGTACAGGCTGATGAATCTCTCAGTGCAGTGGAGCAGGAGAAAGAGGGAAAGAGTTTAGGTTCACCACCCAGAGCTGAATCATCCACAGGACAACCAACCTCAGAAAGTGCAGAAGAGTTCACACCTGAACTCATTCAAACAGTAGATGAGgacaaacacaaaaatacatacaGATTTGTGTCTCCTCATGCTGGTCAGTTTCAGTGCAGTTTGACCAGTCTTGTGTTTGTGATGGATGGTGAAGGAGAGGTGCTGTATAGAGTCGTCTCATGGGATCCTCGTCTGTTAGATGGTTTGGGTCAAATTCAGCCCGTGGGACCCTTATATGACATTGACTGTTTTAATGGCTCAATCTCAAGACTGCACCTTCCTCACTGTGAAATATTTTCTGaGGGCGACAACATGGATGGTTTGGCTGTAGCACATTTCACTGCTGGGAATATTGAAATAATTCAGCCAATTAAAGTGACAGAAACTCATGTGATGATAGACATCAGAGATCTCTCTCTATTTGGACTCCTCTGGATGAAGATATTTAGTCCCCCCATTAGTGGACAAGTTTTGCTTTTCCTTCGAACACTACCTgttgaagagagagagaaaatactGAATGTCCACTTGCTTCCTGGGAATATTCCTGTACCAGAGGTCCAGCTCTGCCACCGGGATAAAAAATACATTGAGACAACTTCAAAATGTCAGTTGTTTTTTGAGCGAGAATACAGTCTGTGTTGCCAGCCAGAGAACTTCCAAGTGCAACCAACGAGTGAGATTTTTGACCATAGTAATTTTGGTCCAAACTATCATCCTACGTTTGAAGTGTTTCTGGGTGTTCACGTTAGGGAGGTCGGACTGGCTATCTTAGACAAAGCTGAAAATGGGAGAGAAGTGTGGAGCAGACAGCGAATATTACTCACAGcacCAAGTCAAGGAGTAGAAGACCACAGATTGACCCCAGgaagtgaattTGTGGATGCCCTCAGAGGTGATCTTATTCAAAAAGTTTCATCAGTGATGGCGATTGCTGACAGCCTGATGAGCGAACGCATGATTACAGATGAACTATACAACGAAGTTCATAATGCCGATACAAATCAGAGGAAAATGAGACTCTTGTTTAGGGCTCTGGACTCTGGAGGAGCTTCTGTGAAAGCAGAGTTTTACCGTCTGCTGATGGAGAATGAACCTCGTCTAGTACATGAACTGGAGTCTAGACACAGCGAATCCAGCGGTCCTCAGTAA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042981 regulation of apoptotic process biological_process
GO:0006954 inflammatory response biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-176 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within inflammatory response; innate immune response; and regulation of apoptotic process. Predicted to be located in cytoplasm.

Ensembl:

ensembl_id ENSDART00000007074

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033647 lncRNA upstream 235819 43654894 ~ 43659284 (+) False XLOC_015814
TCONS_00033653 lncRNA downstream 16664 43935376 ~ 43936132 (+) True XLOC_015819
TCONS_00031448 lncRNA downstream 442254 44360966 ~ 44361611 (+) True XLOC_015820
TCONS_00031449 lncRNA downstream 454509 44373221 ~ 44386693 (+) True XLOC_015821
TCONS_00033654 lncRNA downstream 464460 44383172 ~ 44385238 (+) True XLOC_015822
TCONS_00033655 lncRNA downstream 476602 44395314 ~ 44400668 (+) True XLOC_015823
TCONS_00031440 mRNA upstream 23716 43851983 ~ 43871387 (+) False XLOC_015816
TCONS_00031441 mRNA upstream 28949 43864575 ~ 43866154 (+) True XLOC_015816
TCONS_00031437 mRNA upstream 97885 43749221 ~ 43797218 (+) False XLOC_015815
TCONS_00031438 mRNA upstream 107058 43750899 ~ 43788045 (+) False XLOC_015815
TCONS_00031439 mRNA upstream 111085 43755274 ~ 43784018 (+) True XLOC_015815
TCONS_00031444 mRNA downstream 1749 43920461 ~ 43955410 (+) True XLOC_015818
TCONS_00031445 mRNA downstream 429761 44348473 ~ 44362941 (+) False XLOC_015820
TCONS_00031446 mRNA downstream 429778 44348490 ~ 44362943 (+) False XLOC_015820
TCONS_00031450 mRNA downstream 507897 44426609 ~ 44509829 (+) False XLOC_015824
TCONS_00031451 mRNA downstream 507897 44426609 ~ 44510752 (+) True XLOC_015824
TCONS_00031434 other upstream 592021 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031429 other upstream 896184 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031414 other upstream 1308068 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031413 other upstream 1471304 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031377 other upstream 2858912 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031447 other downstream 433961 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031458 other downstream 645666 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031468 other downstream 1005087 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031495 other downstream 1646501 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031505 other downstream 2370148 46288860 ~ 46288996 (+) True XLOC_015865

Expression Profile

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