RNA id: TCONS_00031444


Basic Information

Item Value
RNA id TCONS_00031444
length 1830
RNA type mRNA
GC content 0.44
exon number 13
gene id XLOC_015818
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43920461 ~ 43955410 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAAATCTATTGACGATAGCGCGTGTGTTCTAGGCAGATTTTCACGCGAAGTTCCTGGTAATGAGCATGCCGTGCTGAAATTGAGATCCATAGATGGAGTCTTCGCAAAGTGACGAATGCATGTCAGATTCAGAAGACGAGGGGGAATGCACATCAGATTCAGATGACGAGAGGGGGATGCGTATATCATTATCAGATTCAGATGACGAGTCCACTTCGAAACGACGTTTTAGGCACCCAAGAAGCTTAAGCATGGGCACAAGATCGAGGACAGTTAAACGCCATAGATTTCACAGGTTACAGGCTTCCAAAAAAACTGAAACTGTTTTGGAGCATGTGGATGGTGCAGAATCATCTTCAGGACAAACACCCTCAGATGATGCAGAAATATTCACACCTGAACTTATTCAAGAAGATGACAAGTACAAAGACAAGAATACATACAGgtttgtttgtcCTCATGCTGGTCAGTTTCAGTGCAGTCTGACCAGTCTTGTGTTTGTGATGGATGGTGAAGGAGAGCTGCTGTATAGAGTCGTCTCGTGGGATCCTCGTCTTTTAGATGGTTTGGGTCAAATGCAGCCTGCAGGACCCTTATATGACGTTAAATGTTTTAATGGCTCAATCTCAAAACTGCACCTTCCTCACTGTGAAATATTCTCTGAGGGCGACAACATGGATGGATTGGCTGTAGCACATTTCACTGGAGGGAATATGGAAATAGTGCAGCCAATTACAGTGACAGAAACCCACGTGATGATTGACATCAGAGATCTCTCTCTATTTGGACTCCTCTGGATGAAGATATTTAGTCACCCCATTAGTGGACAAGTTTTGCTTTTCCTTCGAACACTACCTGTtgaagaggaagaagaggaagagaaaaTACTGAATGTTCACTTGCTTCCAGGGAATGTTCCTGTGTCAGAGGTCGTGCACTCGCACCAGGATAAAAAATACATTGAGACAACTTCAAAATGTCATTTGTTTCTTGAGCGGGAATACAGTCTACGTTGCCAGCCAGAGAACTGTGAAGTGCAACCGAAGagcGAGATCTTTGAGCATAATAATTTTGGTCCAAACTTCCATCCCTCATTTCAAGTGTTTTTGAGTGTTGACGTTAAAAAGGTTGGATTGACTATTTTAGACAAAGCTGAAGATTGTAAGGAAGTGTGGAGCCGACCACGAGTATCACTTAAAGCACCAAGTCAAGGAGTAGAACCTCCAGAGCACAGAATGATTTCAgGAAGTGAATTTGTGGATGCCCTCAGAGGTAAACTCATTCAGAGAGTTTCATCAGTGATGGCGATTGCTGACAGCCTGAGGAGCAAACACATGATTACAGATGAATTATACAGCGAACTTCATAATGCCGATACAAATCAGAGGAAAATGAGATGCCTGTTTATGGCTCTGGACTCTGGAGGAGCTTCTGTGAAAGCAGAGTTTTACCGTCTGCTAAAGAAGAACGAACCTCATCTAGTAGAGGAACTGGAGTCTGGACACAGCAAATCCTTCAGACGTCAGTAATGCTGagagtaagggtgctttcacacctgtgaatcgattcagttgttccgaaacagagattacaattgttacattgttgctctttactcttggagcggttcgctttcacactgcaaagtttctaatcggaccaaaagagctaaaacaagtcacgtgcgagtaaactctccttacattggtcagagtgtcagggtttattttgcagcgtctcGCTAAACTGTCAGGacaggtggtggtttggtggtgattgacagggtgcgcgcgtgtgacgtgtctgaggagagatgcggtggggaggg

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042981 regulation of apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0006954 inflammatory response biological_process
GO:0006508 proteolysis biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-174 Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Acts upstream of or within negative regulation of NF-kappaB transcription factor activity. Located in nucleus. Is expressed in kidney and spleen. Human ortholog(s) of this gene implicated in inflammatory bowel disease 30. Orthologous to human CARD8 (caspase recruitment domain family member 8).

Ensembl:

ensembl_id ENSDART00000123673

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033647 lncRNA upstream 261177 43654894 ~ 43659284 (+) False XLOC_015814
TCONS_00031448 lncRNA downstream 405556 44360966 ~ 44361611 (+) True XLOC_015820
TCONS_00031449 lncRNA downstream 417811 44373221 ~ 44386693 (+) True XLOC_015821
TCONS_00033654 lncRNA downstream 427762 44383172 ~ 44385238 (+) True XLOC_015822
TCONS_00033655 lncRNA downstream 439904 44395314 ~ 44400668 (+) True XLOC_015823
TCONS_00033656 lncRNA downstream 1029073 44984483 ~ 44989293 (+) True XLOC_015832
TCONS_00031442 mRNA upstream 1587 43894368 ~ 43918874 (+) False XLOC_015817
TCONS_00031443 mRNA upstream 1749 43895103 ~ 43918712 (+) True XLOC_015817
TCONS_00031440 mRNA upstream 49074 43851983 ~ 43871387 (+) False XLOC_015816
TCONS_00031441 mRNA upstream 54307 43864575 ~ 43866154 (+) True XLOC_015816
TCONS_00031437 mRNA upstream 123243 43749221 ~ 43797218 (+) False XLOC_015815
TCONS_00031445 mRNA downstream 393063 44348473 ~ 44362941 (+) False XLOC_015820
TCONS_00031446 mRNA downstream 393080 44348490 ~ 44362943 (+) False XLOC_015820
TCONS_00031450 mRNA downstream 471199 44426609 ~ 44509829 (+) False XLOC_015824
TCONS_00031451 mRNA downstream 471199 44426609 ~ 44510752 (+) True XLOC_015824
TCONS_00031452 mRNA downstream 556914 44512324 ~ 44516143 (+) False XLOC_015825
TCONS_00031434 other upstream 617379 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031429 other upstream 921542 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031414 other upstream 1333426 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031413 other upstream 1496662 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031377 other upstream 2884270 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031447 other downstream 397263 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031458 other downstream 608968 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031468 other downstream 968389 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031495 other downstream 1609803 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031505 other downstream 2333450 46288860 ~ 46288996 (+) True XLOC_015865

Expression Profile

//