RNA id: TU436157


Basic Information

Item Value
RNA id TU436157
length 3898
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G383895
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26901788 ~ 26905762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAATTTTATTATTTTAAACCAAAAAATGATACATCACACAGACATTTAAATGTGTATAGTTTTTAAAAATCTTTGACAGGCTTAAGTGTACAACAGTCAGagatatacagtgagctccaaaagtacagtgacactgttgttgttttggctctgtactccagaacTTTGGAtgtgaaatgatacaatgactgaggttaaagtgcagactgtcagcttccATTTGAGGGTATttaaccatttagaaattacagcactttttgtacattgtCTCCCccttttaggggaccaaaagtattgggacaaattgaCTTATGTGTATTGAAGtagtcaaaagtgtagtatttggtcccatatttctcgaacgcaatgattacatcaagcttgtgactctacaaacttgtgcATTTGTCgtttgattattttgtgcccaatagaaattcatGGTAAATGATGTATTGTGTAATTTGAGTGACTTTTATTTGATATTTGTGCTTCTGTAACTTTCCCACGCATCATTATTCAGGAGTATTCATAATCATAGTAGCATCCatatgaatgtagaagtgttcagaacatattatattcttatttacaataaaagtgactccaaaatgacaataccATTTCTATCAGGCACAAAATAATCAAactcaaccaaaacaaacagcaaatgcatccaacaagtttgtagactCACACACGTAATCCCGGTgtactaggaatatgggaccaaataacaaaacatttgactactttaatatacGTATatgtggcaccttcattggggatatagatgaaaataccttcaaattaaagctgacagtctgcactttaacctcatagtcattgtataatttcaaatccaaagtgctggagcacagtcaaaaaaagtgtcaaacccCAATAATTTTGGAGCTCACTGGAACTCTTGAACTAAAATCTAGAATTTACTGGGATTGTTCTAATACTATTCTTTTGAAAGATGTtttgaaaggtgtgtgtgtgtgtgggggggggggggattctatCCATGCTTTGTAATATAAACACATTCAGAGCAataacatacttttttttttgatACAGAGTCTGAGATAGTAAGGTAAATTAGCAGTGTGGAACAAACTTGCAGGTATACTGCATTTATAAAGCATAGAAGCAAAACTGCAAACCTCTCAGGTTGTATGGCAAAACCTTGTATTTTCAGTGATATCCCTTATGGAAGTGGGCATGTATTTTTAGTGTCACCTAAGCATTGGCGTGCAGATCAAGCTTTTACGTCATGGGCTTTTCAATTAACCACCTAAGTTGTAATTCTTCTACAGAGTGATTTATTTGCCATTTATGTGGCTTTAGGCTACTAATTGTAAGAAACAAAAGAAAAAAGTGACACATGCATAAAAAGCTTAAAGGTCTACCATTGCCTTGCTACCAGCCACTCGTTGAACATTTCCCACTTTACACTAGCTGATCCGTAGGAATCACACTGGCTGACAAGAAGCATACGGGTCACTAGACATGACATAATCATCTGGAATGTGTATAATATAAACTAGACATTAATGCATTGACATACGCTCTATGCAAATGAAACATTTCAGAGTAAGAAAAAAATAGACTTTTTACTGACTGGCCAGAAAGCATCTATGGGGAAACCAAAATATTCAGACAATCTTCACAGGGGAAAATGCTCCCTTCCTCATACTGCTCTACCCATGACGAACAAGGCGGTCAGGTAGGATCCATAGCTCAATATGCAACAGAGCTGCAGGACTGCTCTCGCACGGAACACGCAAGCTTCTTGGAGTGGGTAGAAGTCGCTTCTAACCACTGGTCCATTGCACCGTCAGATATATGGTCAGATGTTTTATCTACCCACAAATTGTTATTGCTGGGGTTACAATGATGTGGTCCTAGAGCTGTGGTTAGGGAAACATCCACCCACCTCAAGCAAAACTCTTCCCAGCAAATATCCATTGAACAACTGATACACTACAATTCCATAAACTCCAAGCATCAAGTCCTCATTTTGGCTACTGTGAAATGAAACAAACACACTCCATACAACAAATATTTTTTCAGTGTACAAATGTAGCAGTTTCTTTTTTAGGAGGGGGGGGGTCTTCTTCTCAAAGGCACCTTTCAAAATGTAATAGCTTATGACACTTCCCTGTCAAGATTCAGACACCCATCATACATCTGACTATGAATAAACCTAAAACAAAACCGCCTAAAACTACAATAAAACCCATAGAAATTATTCTATATAAACTGAAATCTCTCCTAATATGTACATGAAAAACTGAACATATAATGTTTCATGTACATCTTATAAGTCACCTTCACTCTTCTTTCTGTACAGTACTGATAAACCTCAACACAGTGCTATAACACCAGTAATCAATCACTGGTGTAGTTCAGTCACAGGGGCTGCTACTCTACTGCCAACATGTCTTACAAACTGATTGTGATTGCTGTACTCCGAAAAGAAGTTTGAATGGGAAAATATGCAATAAATAAAGCTCAACTAAATCTCACGTGTCTGGTCAGAGATCAGTGCAAATTAGTTTATTTTTCAATTCGGGCAATATTCATTTGTCTGATTGGTCTACAAAGTGCTATTCCTGGCCTATACTGgataaaataacaatatttgcTACAAACTTCAGGAAATATTAATAAGATGATCCATCTCAAGCACTCAGACTAAAAAAGCTCAATGGGGTTTATGCAGTTCCAGCTGTTCTTCCACCATGGCAGCCATTTCACTTTGGTCAAAAGGAAATGCGCAGTGAGGTCCATTTCCTGTCAAGGCCCAGAAGTGGCACATACAGCAATCCTCTCTACATTCTCCTGTTTATGGTCAAAAAAATCTATCTGCTGGGTCCAAAAGGGCAACATTGTCATTCTTAATACGGCAAACTTAGCATCGACAAATTATCACAGACAGCGATGAATAAAGTACAATACTTCTGTAACAGCACCTTTATATGGTTCTATCACAGGAATGTACATTAAGCTGGGTCAATAACAACACACAACATTTTTTTCGCCACACACAGGCCTGTGGGCTGTGACAGGCCATACAATTGTGTTAACGCTCTTAAAAACTCTTCTGGTTTCCTCGAAAACGACAAATAAAATCTAAATCAATGTAAACCATCAAAGAAACCAAAAAGAGGAAAACAGACAAGTTAAGCCCACTCGCTATAATATCAGGCTATACTATTGTCCACAAATCACCATTACAAGCCAAACTAAAAATAGCACAATGCCCCGCGTAGGGGTTGAGATTCATATTTTTCACACAGAGTGGCTTCTTATAGAGTGATACCTCACGTCTTAAGAGAAGTGAGGGTCTATTTGTGATTGCTTAGCGCTGAATTATTGACAGAATCAAATGGAGCGTGTCTGTGACTGCAGTAGAATCCTCCGGCAGACTGCTTGGCTGTGATTGCTCAGGGCAGCGTTACTGACGGTAAGAGGCTGTGTGTATGGGACACTGCACAGAAATGAATAGCTAACACACTCAGTCCGTGTAGTGGGGTCCTGTCTGACACACGGAGGAGTGTGTAGTGGCCTTCTCACAAGCCCTTCATCTCCAACATCAACCAGGCGGTCACAGGCTCCACTGTGAGTATGAGAGACCAGCGTCACCAGTCCCAAGCATACCCAGTCCAGGCCCTTCATAACACACCCCCTGCCCCCACCACTGGCTGGTATCTCCATGGAAactagagggtggagggaggataCTGAGTTGGTAGGGAGGAAGTCAGATTGAATGGGCATGGTGGTGTCTGTCCAGAATGACTGACATCATAGTTTAGCAGCATCCACGGGTGCTGAGCAGAGTCCTCAGATGCAGAGCCCTGACTGTAGTGCTGTGAGGCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436198 lncRNA upstream 36168 26865340 ~ 26865620 (+) True G383936
TU436193 lncRNA upstream 42576 26858845 ~ 26859212 (+) True G383931
TU436146 lncRNA upstream 85601 26810795 ~ 26816187 (+) False G383886
TU436148 lncRNA upstream 85601 26810795 ~ 26816187 (+) False G383886
TU436147 lncRNA upstream 85601 26815529 ~ 26816187 (+) True G383886
TU436233 lncRNA downstream 50826 26956588 ~ 26957041 (+) True G383971
TU436266 lncRNA downstream 97812 27003574 ~ 27004136 (+) True G384003
TU436322 lncRNA downstream 174700 27080462 ~ 27080702 (+) True G384058
TU436337 lncRNA downstream 203038 27108800 ~ 27109029 (+) True G384073
TU436338 lncRNA downstream 205126 27110888 ~ 27111122 (+) True G384074
XM_021602281.2 mRNA upstream 6692 26892472 ~ 26895096 (+) True LOC110523522
NM_001165158.1 mRNA upstream 9368 26889974 ~ 26892420 (+) True atpbb
XM_021602280.2 mRNA upstream 14143 26884887 ~ 26887645 (+) False LOC110523521
XM_021602279.2 mRNA upstream 14143 26884901 ~ 26887645 (+) False LOC110523521
XM_036977159.1 mRNA upstream 14143 26884972 ~ 26887645 (+) True LOC110523521
XM_036977171.1 mRNA downstream 679843 27585605 ~ 27657306 (+) False LOC110523526
XM_036977167.1 mRNA downstream 679844 27585606 ~ 27657306 (+) False LOC110523526
XM_036977169.1 mRNA downstream 679844 27585606 ~ 27657306 (+) False LOC110523526
XM_036977174.1 mRNA downstream 679844 27585606 ~ 27657306 (+) False LOC110523526
XM_036977170.1 mRNA downstream 679845 27585607 ~ 27657306 (+) False LOC110523526
TU436048 other upstream 238175 26661838 ~ 26663613 (+) True G383794
TU435241 other upstream 441092 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other upstream 441253 26437659 ~ 26460535 (+) True LOC110522865
TU434985 other upstream 715098 26174945 ~ 26186690 (+) True LOC110523503
TU434321 other upstream 1676058 25225442 ~ 25225730 (+) True G382186
TU437362 other downstream 769590 27675352 ~ 27683393 (+) True LOC110522888
TU437387 other downstream 800952 27706714 ~ 27707078 (+) True G385053
TU437511 other downstream 998705 27904467 ~ 27904731 (+) True G385171
TU438217 other downstream 1510843 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 2020515 28926277 ~ 28930931 (+) False spag8

Expression Profile