RNA id: TU436322


Basic Information

Item Value
RNA id TU436322
length 241
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G384058
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27080462 ~ 27080702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGAGAACTTGGTTGTCCTATGGTTCTTTTGCATACGACCTTCTCAAAATTtactgggaatggtgcaggaaaGTTGCTTGGCTTGGGAACTTTCTCAAAATCTTATcaagtcaaatgttatttgtcacatgcgtcgaatacaacaggtgtagaccttcctgtgaaatgcttacttacaagcccttaaccaacaatgcagttgagaaaaataagagttaagaataATATTCactaataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436266 lncRNA upstream 76326 27003574 ~ 27004136 (+) True G384003
TU436233 lncRNA upstream 123421 26956588 ~ 26957041 (+) True G383971
TU436157 lncRNA upstream 174700 26901788 ~ 26905762 (+) True G383895
TU436198 lncRNA upstream 214842 26865340 ~ 26865620 (+) True G383936
TU436193 lncRNA upstream 221250 26858845 ~ 26859212 (+) True G383931
TU436337 lncRNA downstream 28098 27108800 ~ 27109029 (+) True G384073
TU436338 lncRNA downstream 30186 27110888 ~ 27111122 (+) True G384074
TU436344 lncRNA downstream 36066 27116768 ~ 27116996 (+) True G384080
TU436351 lncRNA downstream 45081 27125783 ~ 27126082 (+) True G384087
TU436352 lncRNA downstream 46495 27127197 ~ 27127406 (+) True G384088
XM_021602281.2 mRNA upstream 185366 26892472 ~ 26895096 (+) True LOC110523522
NM_001165158.1 mRNA upstream 188042 26889974 ~ 26892420 (+) True atpbb
XM_021602280.2 mRNA upstream 192817 26884887 ~ 26887645 (+) False LOC110523521
XM_036977171.1 mRNA downstream 504903 27585605 ~ 27657306 (+) False LOC110523526
XM_036977167.1 mRNA downstream 504904 27585606 ~ 27657306 (+) False LOC110523526
XM_036977169.1 mRNA downstream 504904 27585606 ~ 27657306 (+) False LOC110523526
XM_036977174.1 mRNA downstream 504904 27585606 ~ 27657306 (+) False LOC110523526
XM_036977170.1 mRNA downstream 504905 27585607 ~ 27657306 (+) False LOC110523526
TU436048 other upstream 416849 26661838 ~ 26663613 (+) True G383794
TU435241 other upstream 619766 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other upstream 619927 26437659 ~ 26460535 (+) True LOC110522865
TU434985 other upstream 893772 26174945 ~ 26186690 (+) True LOC110523503
TU434321 other upstream 1854732 25225442 ~ 25225730 (+) True G382186
TU437362 other downstream 594650 27675352 ~ 27683393 (+) True LOC110522888
TU437387 other downstream 626012 27706714 ~ 27707078 (+) True G385053
TU437511 other downstream 823765 27904467 ~ 27904731 (+) True G385171
TU438217 other downstream 1335903 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 1845575 28926277 ~ 28930931 (+) False spag8

Expression Profile