RNA id: TCONS_00031448


Basic Information

Item Value
RNA id TCONS_00031448
length 528
lncRNA type retained_intron
GC content 0.33
exon number 2
gene id XLOC_015820
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44348473 ~ 44362943 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttttttttaacaaatttaaacaatACCTTTCATGATCCAATTGTCTTAGTACAAAAAGGCTCTAAAAACTTCAACTGTCTGCGGCTCTTTTCCTATTTAACAAGTATATTTTGCTCTCTCAATATGTATTCTTTTACATACCCCCTTTTTAtctgtttcttcttctttttttttcattgataaGGATAATTGTTCTGCCTATTAgttgttatatgtatatattgtatacacTGTTTATgggcttacaaaaaaaaaaactctctggacagaaataaaaagaaaaattacaatGAAGTAAAATTCACATCAATCTTCTGTCATTGAAGGGCTCCGCCGTGTTTTGGTACAACTTACACAAAAATGGAGAGctggatttaaaaacaaaacacgcAGGATGTCCAGTTTTAGTGGGAAACAAATGGGTGGCTAATAAATGGATCCATGAGTTTGGACAGGAGTTCAGGAGACCCTGCTCTTTGTCACAATGGGAATGAAAGACACTGTAACTTTGTAGAAATCATTTAA

Function

GO:

id name namespace
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-954 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human P4HA3 (prolyl 4-hydroxylase subunit alpha 3).

Ensembl:

ensembl_id ENSDART00000157037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033653 lncRNA upstream 424834 43935376 ~ 43936132 (+) True XLOC_015819
TCONS_00033647 lncRNA upstream 701682 43654894 ~ 43659284 (+) False XLOC_015814
TCONS_00031449 lncRNA downstream 11610 44373221 ~ 44386693 (+) True XLOC_015821
TCONS_00033654 lncRNA downstream 21561 44383172 ~ 44385238 (+) True XLOC_015822
TCONS_00033655 lncRNA downstream 33703 44395314 ~ 44400668 (+) True XLOC_015823
TCONS_00033656 lncRNA downstream 622872 44984483 ~ 44989293 (+) True XLOC_015832
TCONS_00033657 lncRNA downstream 1070971 45432582 ~ 45433628 (+) True XLOC_015843
TCONS_00031444 mRNA upstream 405556 43920461 ~ 43955410 (+) True XLOC_015818
TCONS_00031442 mRNA upstream 442092 43894368 ~ 43918874 (+) False XLOC_015817
TCONS_00031443 mRNA upstream 442254 43895103 ~ 43918712 (+) True XLOC_015817
TCONS_00031440 mRNA upstream 489579 43851983 ~ 43871387 (+) False XLOC_015816
TCONS_00031441 mRNA upstream 494812 43864575 ~ 43866154 (+) True XLOC_015816
TCONS_00031450 mRNA downstream 64998 44426609 ~ 44509829 (+) False XLOC_015824
TCONS_00031451 mRNA downstream 64998 44426609 ~ 44510752 (+) True XLOC_015824
TCONS_00031452 mRNA downstream 150713 44512324 ~ 44516143 (+) False XLOC_015825
TCONS_00031453 mRNA downstream 150778 44512389 ~ 44545869 (+) False XLOC_015825
TCONS_00031454 mRNA downstream 150784 44512395 ~ 44512779 (+) False XLOC_015825
TCONS_00031447 other upstream 7399 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031434 other upstream 1057884 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031429 other upstream 1362047 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031414 other upstream 1773931 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031413 other upstream 1937167 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031458 other downstream 202767 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031468 other downstream 562188 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031495 other downstream 1203602 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031505 other downstream 1927249 46288860 ~ 46288996 (+) True XLOC_015865
TCONS_00031509 other downstream 2751085 47112696 ~ 47113654 (+) True XLOC_015873

Expression Profile

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