RNA id: TU437993



Basic Information


Item Value
RNA id TU437993
length 791
RNA type TUCP
GC content 0.37
exon number 2
gene id G385617
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28009267 ~ 28010077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCAAGGAAGGGTGCTTTTATCCGAAGCTGAGGGGCTATATCGTGCATCCTATCTTTTTTCATCTATTGACATTCCCAAATCCACTTGCTGTACCTTAGGCTTTTGTACAACTTCATATGGAAAAACAAGCCACATAAGAGGGTTTGTGATGGCGGTCTAAATGTCTTAGACTTCACTCTCTTCAATCAGATATCAAAGGTCAACTGGATTAAAAGGTACATAAAAAATCCTCATAGTTTCTGGAATGTTATACCTCGTTTTGTTTTCAGAAGttcagagtagaggtcgaccgattatgatttttagTGGGAATCTATTtacagagaaaatgtatggaaaGCAAGGCATATGACACAGTTATTAAAGCTATACCTAGTGGGATAAAAACTTTACTTCAGAATAATGCATATTTTGGAACATCTCCGATTGTAAGCGATATCCAGGTGAATGGCATTGGTCTACTAGATACGAAATTCAACTATCGTTTATTAAGGGATATTTTCTACAGGAAGTCTATTCCCTCTGCGATATTTTGTTGGGCTTCAGTGTTTGATGTAAACTGGCGCCATGCTTGGCTCACTCCACACATATTTATGGTGACCAATAAAGTAAAGGAGATCTCCTTTAAGATTATCCATAGATTCTATCCGTGTAATAGCTTGATTTCTAAATATATACCTGATGTTACCAGTGAATGCAGTTTTTGTGAACTAGAAACAATCTATTGAACACTTCTGTCATTGTTTATATAGTGAAGTGTTCTGGACTGATGTAAAACTATATCTTGGCCT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU437854 lncRNA downstream 52821 27956235 ~ 27956446 (-) True G385493
TU437847 lncRNA downstream 56521 27952521 ~ 27952746 (-) True G385486
TU437838 lncRNA downstream 67013 27942027 ~ 27942254 (-) True G385477
TU437786 lncRNA downstream 160866 27848202 ~ 27848401 (-) True G385425
TU437763 lncRNA downstream 200885 27808115 ~ 27808382 (-) True G385402
TU438039 lncRNA upstream 89247 28099324 ~ 28099558 (-) True G385654
TU438042 lncRNA upstream 93163 28103240 ~ 28103603 (-) True G385657
TU437971 lncRNA upstream 101531 28111608 ~ 28112752 (-) True G385600
TU438130 lncRNA upstream 115809 28125886 ~ 28126320 (-) True LOC110522901
TU438150 lncRNA upstream 126007 28136084 ~ 28136313 (-) True G385743
XM_036977176.1 mRNA downstream 64529 27764855 ~ 27944738 (-) True LOC110522892
XM_036977162.1 mRNA downstream 727760 27140510 ~ 27281507 (-) False LOC110522882
XM_036977163.1 mRNA downstream 727760 27140510 ~ 27281507 (-) False LOC110522882
XM_036977164.1 mRNA downstream 727760 27140510 ~ 27281507 (-) False LOC110522882
XM_036977165.1 mRNA downstream 727760 27140510 ~ 27281507 (-) False LOC110522882
XM_021602303.2 mRNA upstream 7669 28017746 ~ 28041547 (-) False LOC110523530
XM_021602305.2 mRNA upstream 7669 28017746 ~ 28041547 (-) False LOC110523530
XM_021602306.2 mRNA upstream 7669 28017746 ~ 28041548 (-) True LOC110523530
LOC118964545 mRNA upstream 33889 28043966 ~ 28045743 (-) True LOC118964545
XM_036977179.1 mRNA upstream 65703 28075780 ~ 28080536 (-) True LOC110523532
TU435637 other downstream 2010487 25996806 ~ 25998780 (-) True G383422
TU434637 other downstream 2567473 25439021 ~ 25441794 (-) True LOC110523492
TU432686 other downstream 4247460 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 4297376 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 4452724 23547200 ~ 23556543 (-) True LOC110522831
TU438176 other upstream 204466 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 341698 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 480889 28490966 ~ 28491372 (-) False G386222
TU439211 other upstream 993606 29003683 ~ 29004755 (-) True anapc2
TU439206 other upstream 999161 29009238 ~ 29045158 (-) False G386725

Expression Profile


TU437993 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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TU437993 Expression in each Bioproject

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TU437993 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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