RNA id: TU439304


Basic Information

Item Value
RNA id TU439304
length 212
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G386814
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29196887 ~ 29197098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacacaaacaacaagtgcgaagttaaaattggcaaaaaacacacatttctttccacagggccatggggtgagacaggaatgcagcttaagccccaccctcttcaacatatatatcaacaaattggtgagggcactagaacagtctgcagcacccagcctcaccctactagaatttGAAGTAAAATGtatactgtttgctgatgatctggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439294 lncRNA upstream 8975 29187621 ~ 29187912 (+) True LOC110523576
TU439295 lncRNA upstream 22088 29174348 ~ 29174799 (+) False LOC110523576
TU439069 lncRNA upstream 123724 29070812 ~ 29073163 (+) True G386606
TU439028 lncRNA upstream 201764 28994145 ~ 28995123 (+) True G386568
TU438991 lncRNA upstream 231239 28961817 ~ 28965648 (+) True G386537
TU439305 lncRNA downstream 33 29197131 ~ 29197363 (+) True G386815
TU439344 lncRNA downstream 79703 29276801 ~ 29277657 (+) True G386846
TU439428 lncRNA downstream 98080 29295178 ~ 29295389 (+) True G386918
TU439470 lncRNA downstream 167614 29364712 ~ 29364984 (+) True G386959
TU439473 lncRNA downstream 170459 29367557 ~ 29367678 (+) True G386962
XM_036977220.1 mRNA upstream 8919 29174319 ~ 29187968 (+) False LOC110523576
XM_036977221.1 mRNA upstream 8919 29174319 ~ 29187968 (+) False LOC110523576
XM_036977222.1 mRNA upstream 8919 29176618 ~ 29187968 (+) False LOC110523576
XM_036977219.1 mRNA upstream 8919 29176619 ~ 29187968 (+) False LOC110523576
XM_036977223.1 mRNA upstream 8919 29176622 ~ 29187968 (+) False LOC110523576
XM_021602390.2 mRNA downstream 57540 29254638 ~ 29262641 (+) False LOC110523578
XM_036977228.1 mRNA downstream 57932 29255030 ~ 29262641 (+) True LOC110523578
XM_021602393.2 mRNA downstream 107239 29304337 ~ 29311723 (+) False mtfp1
XR_002473468.2 mRNA downstream 107239 29304337 ~ 29312328 (+) True mtfp1
XM_036977231.1 mRNA downstream 144180 29341278 ~ 29446180 (+) False LOC110523581
TU438959 other upstream 265956 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 779332 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1292156 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1489809 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1513494 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 544702 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 699888 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1089853 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2763257 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 3023083 32220181 ~ 32220533 (+) True G390393

Expression Profile