RNA id: TCONS_00031463


Basic Information

Item Value
RNA id TCONS_00031463
length 2212
RNA type mRNA
GC content 0.46
exon number 12
gene id XLOC_015829
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44615000 ~ 44693315 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGTTACAGTTGCCAAGAGCGTCAACATGCCCCTCATCAGCCTGCCAAAGGGGGCGGGGCCATCTGCAGTGAGTGGGGCCAAAAGCTCCAGTCCCTCATTAGTAACTGCAGCATCACTGATTGGAGGAGGAACGGTTAGCGGGAAAACTGCTGCCACCATCTCAGGTATGTTGAAGTTGCACCCAGCTCAGTCCAGTTCCCAGCAGACAGTTCTCACCATTCCAGCCAATCAGCTTAAGCAGCTTAGTGTGGGCAGTGGCTCCTCAGGCCTGCAGACCATCTTGATGCCTGTTGGCAAAGTTGTACAGTCTGGTTCTAAAGCTACATCTAACAACAACTCCACCCCAAGTGGAGCTGCTTCCTCAGCATCCACACCTATAGCTCAAGTTAAAACTGAACCTGGTTTGGTGAGCTCCACTTGTACGACTCCTGTACCCCAAACATCTGCCCCGACCTCTGCAGCACCCGCCTCTGCACCACTGCCGACAGCCCCCACATCCACAGATGCAGCTGCTACTGTCAAAGTAGAACAGGGCTTGGAGTCTACAACACATGAACTCATTAaCACGGAGCATATAGAAAACATGACGCAACTTCTGACAGCCATAGTGAAGAAATTCCCTCTGATTGTCCCAGAGAAAAATGAGGACTCTCATCCTTTCTGCGCCACGTCTGTGGATCAGTATTACTCCTGGAACATTGGCAAACGCAGAGCTGCAGAGTTGCAGCGAGCAGTGGCTGTGCGGCGTGTGTGTGCGGATCTATTAGAGCGAACCCCCCGACTTCAGGCCCTCACTCCAGCAAGAACTAAAGAGGTGCTGCGCTGGTGCCGTCTCCGAGGATACACGCCTCCTGACCCAGAACCCCAGCGCACAGAGGAGGACTCCATCGAGGACATACTCACACAGATTGACAGCGAACCAGagTGCAGCTCGACTTTGACAGGCTGTGAAGAACTTTCTCAACGTCTAGAGCAACTTCAGAGGATCCTGAAAGCGGAGCCCGATGAGGAGGACGATGAACTGCTTGACATCATCAGTGTAAAGGAATTAGATGCCGGGAAGGTCAAAATTAAACAGGAACAGGACGAGGCTGAACAAGAGCCCAAGTTCTACATGGGTCGCTGTCCATCGACCCAGCTCATCAGAGACACGGCGGAGCAGaTTGGTGTGACACTCCAGCAGGTGGAGGTGGAGAAGAACGTTTTTGCTCCTGTTGTGGAGGCCATGATTCTTAAGGCTGTAGAACAGTTTTCCAGTGAAATCCTCAGGGAATCGTTGGCCAATGCGCATGGGAAATCCCAACAAAACAGAACTCCGAGAGAGATATCAGCTATGGATGTGCATCAGGCCATTTGCTCTATTCCCACCTGTGATTTTTTGACTAATAGGTACATGGGCATCATGGTGAAGGATGAAGGCCATGCTGAATAATTTTACAGCTTCTTCGCGTGATCTGACCACAGATGGACAGGTGGACCGCTCACTCCTTCCTCTCACATTCTATAAAGGTGGAAAATGTGACCAATCACAGGCCCATGTCCTTACAGGAGTCAGACATTGTCGTGACAACAGCTCAGTTTATATACTGAGTGTATTAAAACCAAGAGTAACATCAAAAAACAATAACTTTGAAGGGTTGACGCTCAGCCTGAAcagtatttgttttatatgcCTCTATTTATTCCatctttcattaattaattctctGGTATTTATAAAAGATGGTCTGGTTTATTATTCCAACTAATGTACAGTGTTATCTTTTTAAAGAAACACAATTCAGGCCCCAGTTATGTCAATAATAGTGAATTTACTCTTAAATTAACTTATTCTGACTTCACAGAGTCTTTCAATCTCTGCAAATGCAACCATCACATGATTTTGCCGTTGACGCAGAGCTGTTTAACTTGTCTTagttttaaaggggcagttcacccaaaaatggaaattctgtaaTATTTgctcaccctccacttgttccaagcctatttgcatttctttcttctggtaaacgcaaaagaagatactttCTGAAGAATGTGGAAAAGCAGCAGTCATTGACTGTCATAGtaatttttgttcctactatggatgtcaatggctgctggcttccaacattcttcactgtaaaaaattctgggttccacacaattgttttgtgttggaacaatatgaaggaattaaattaacttaatagtttttacaaattt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081104-292 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 4. Orthologous to human YEATS2 (YEATS domain containing 2).

Ensembl:

ensembl_id ENSDART00000139137

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033655 lncRNA upstream 266037 44395314 ~ 44400668 (+) True XLOC_015823
TCONS_00031449 lncRNA upstream 280012 44373221 ~ 44386693 (+) True XLOC_015821
TCONS_00033654 lncRNA upstream 281467 44383172 ~ 44385238 (+) True XLOC_015822
TCONS_00031448 lncRNA upstream 305094 44360966 ~ 44361611 (+) True XLOC_015820
TCONS_00033653 lncRNA upstream 730573 43935376 ~ 43936132 (+) True XLOC_015819
TCONS_00033656 lncRNA downstream 291168 44984483 ~ 44989293 (+) True XLOC_015832
TCONS_00033657 lncRNA downstream 739267 45432582 ~ 45433628 (+) True XLOC_015843
TCONS_00033297 lncRNA downstream 767818 45461133 ~ 45461974 (+) True XLOC_015846
TCONS_00033298 lncRNA downstream 774752 45468067 ~ 45468585 (+) True XLOC_015847
TCONS_00033658 lncRNA downstream 1363491 46056806 ~ 46060001 (+) True XLOC_015862
TCONS_00031462 mRNA upstream 9798 44615153 ~ 44656907 (+) False XLOC_015829
TCONS_00031459 mRNA upstream 62250 44571200 ~ 44604455 (+) True XLOC_015828
TCONS_00031457 mRNA upstream 109387 44545912 ~ 44557318 (+) True XLOC_015826
TCONS_00031456 mRNA upstream 124457 44528255 ~ 44542248 (+) True XLOC_015825
TCONS_00031455 mRNA upstream 140085 44518636 ~ 44526620 (+) False XLOC_015825
TCONS_00031465 mRNA downstream 87870 44781185 ~ 44926290 (+) False XLOC_015830
TCONS_00031466 mRNA downstream 87919 44781234 ~ 44922853 (+) False XLOC_015830
TCONS_00031467 mRNA downstream 87941 44781256 ~ 44922853 (+) False XLOC_015830
TCONS_00031469 mRNA downstream 279405 44972720 ~ 44981344 (+) False XLOC_015831
TCONS_00031470 mRNA downstream 284574 44977889 ~ 44980765 (+) True XLOC_015831
TCONS_00031458 other upstream 102211 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031447 other upstream 313138 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031434 other upstream 1363623 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031429 other upstream 1667786 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031414 other upstream 2079670 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031468 other downstream 230484 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031495 other downstream 871898 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031505 other downstream 1595545 46288860 ~ 46288996 (+) True XLOC_015865
TCONS_00031509 other downstream 2419381 47112696 ~ 47113654 (+) True XLOC_015873
TCONS_00031510 other downstream 2455618 47148933 ~ 47149569 (+) True XLOC_015874

Expression Profile

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