RNA id: TCONS_00033298



Basic Information


Item Value
RNA id TCONS_00033298
length 398
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_015847
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45468067 ~ 45468585 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CACGCGCAGAAGGCGTGACCACGCAACTATGAACTTTTTCCTTATGACGCACTGGTTTCGTTTTCAAAAGCGGGAATCACTGAGCTGTTTTGGTCGTTAAAACAGAATAATGTTTTGCCATTTTAGTCAGTGTTAGATCTAGTTAAAAGTCAGTAACTAGTATATCAGCAAATCGATAATTCAGTATCAAGGATTGTTTATGTGACACACGATGTCTAGTGATTACACAGACCGAAATAACTTAGCTTCCGCAATTAAGACATTAGGAGATATGCTAGAAAAGGATGAAGCATTTCAGAGGTTAATGTATAATGCGAGCACAAAGGGAGAAATCAACCGGGGCAGAGTGAATAAAGTGTTCCTTAAAGCACTACTGTCAGCAGGAGACAAAGTAGGAG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033297 lncRNA upstream 6093 45461133 ~ 45461974 (+) True XLOC_015846
TCONS_00033657 lncRNA upstream 34439 45432582 ~ 45433628 (+) True XLOC_015843
TCONS_00033656 lncRNA upstream 478774 44984483 ~ 44989293 (+) True XLOC_015832
TCONS_00033655 lncRNA upstream 1067399 44395314 ~ 44400668 (+) True XLOC_015823
TCONS_00031449 lncRNA upstream 1081374 44373221 ~ 44386693 (+) True XLOC_015821
TCONS_00033658 lncRNA downstream 588221 46056806 ~ 46060001 (+) True XLOC_015862
TCONS_00033660 lncRNA downstream 725742 46194327 ~ 46332513 (+) False XLOC_015863
TCONS_00033659 lncRNA downstream 725742 46194327 ~ 46332513 (+) True XLOC_015863
TCONS_00033661 lncRNA downstream 812117 46280702 ~ 46317783 (+) False XLOC_015864
TCONS_00033662 lncRNA downstream 812243 46280828 ~ 46312806 (+) True XLOC_015864
TCONS_00031487 mRNA upstream 11175 45454415 ~ 45456892 (+) True XLOC_015845
TCONS_00031486 mRNA upstream 19776 45441563 ~ 45448291 (+) True XLOC_015844
TCONS_00031485 mRNA upstream 25885 45441007 ~ 45442182 (+) False XLOC_015844
TCONS_00031484 mRNA upstream 48381 45382433 ~ 45419686 (+) True XLOC_015842
TCONS_00031483 mRNA upstream 91659 45374163 ~ 45376408 (+) True XLOC_015841
TCONS_00031488 mRNA downstream 11256 45479841 ~ 45487853 (+) False XLOC_015848
TCONS_00031489 mRNA downstream 15598 45484183 ~ 45550327 (+) True XLOC_015848
TCONS_00031490 mRNA downstream 42874 45511459 ~ 45515448 (+) True XLOC_015849
TCONS_00031491 mRNA downstream 53298 45521883 ~ 45522870 (+) True XLOC_015850
TCONS_00031492 mRNA downstream 63852 45532437 ~ 45537935 (+) True XLOC_015851
TCONS_00031468 other upstream 543391 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031458 other upstream 903573 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031447 other upstream 1114500 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031434 other upstream 2164985 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031429 other upstream 2469148 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031495 other downstream 96628 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031505 other downstream 820275 46288860 ~ 46288996 (+) True XLOC_015865
TCONS_00031509 other downstream 1644111 47112696 ~ 47113654 (+) True XLOC_015873
TCONS_00031510 other downstream 1680348 47148933 ~ 47149569 (+) True XLOC_015874
TCONS_00031532 other downstream 2473606 47942191 ~ 47943492 (+) True XLOC_015885

Expression Profile


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