RNA id: TCONS_00031495


Basic Information

Item Value
RNA id TCONS_00031495
length 303
RNA type processed_transcript
GC content 0.41
exon number 2
gene id XLOC_015853
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45565213 ~ 45565811 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgatcacaccgaaCGCACATTTACGTTCCAAAAATGCAAGGCGCACCACACTGCCACACTTGTGcactagtggttgctgttttgagttatttgGAGCTGTGTGACTTCACAAAacttgaatatcacaataatattaaatattacaattatattaatatcaacagcaacactcgcgcacaatatccagctgattcagtcgttgcctagcgacataaaaaaGCGCTTCTTTTTCTTGTCAAcgaaaaaaggcagtgtggtgcgcctcGTTTTTTGGGAACGTAAATGTGCGTTCATTGTGATCG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070216-2 Is expressed in neuromast support cell. Orthologous to human FNDC7 (fibronectin type III domain containing 7).

Ensembl:

ensembl_id ENSDART00000134101

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033298 lncRNA upstream 96628 45468067 ~ 45468585 (+) True XLOC_015847
TCONS_00033297 lncRNA upstream 103239 45461133 ~ 45461974 (+) True XLOC_015846
TCONS_00033657 lncRNA upstream 131585 45432582 ~ 45433628 (+) True XLOC_015843
TCONS_00033656 lncRNA upstream 575920 44984483 ~ 44989293 (+) True XLOC_015832
TCONS_00033655 lncRNA upstream 1164545 44395314 ~ 44400668 (+) True XLOC_015823
TCONS_00033658 lncRNA downstream 490995 46056806 ~ 46060001 (+) True XLOC_015862
TCONS_00033660 lncRNA downstream 628516 46194327 ~ 46332513 (+) False XLOC_015863
TCONS_00033659 lncRNA downstream 628516 46194327 ~ 46332513 (+) True XLOC_015863
TCONS_00033661 lncRNA downstream 714891 46280702 ~ 46317783 (+) False XLOC_015864
TCONS_00033662 lncRNA downstream 715017 46280828 ~ 46312806 (+) True XLOC_015864
TCONS_00031494 mRNA upstream 8942 45552901 ~ 45556271 (+) True XLOC_015852
TCONS_00031489 mRNA upstream 14886 45484183 ~ 45550327 (+) True XLOC_015848
TCONS_00031492 mRNA upstream 27278 45532437 ~ 45537935 (+) True XLOC_015851
TCONS_00031491 mRNA upstream 42343 45521883 ~ 45522870 (+) True XLOC_015850
TCONS_00031490 mRNA upstream 49765 45511459 ~ 45515448 (+) True XLOC_015849
TCONS_00031496 mRNA downstream 27972 45593783 ~ 45598651 (+) True XLOC_015854
TCONS_00031497 mRNA downstream 54138 45619949 ~ 45626763 (+) True XLOC_015855
TCONS_00031498 mRNA downstream 70223 45636034 ~ 45639159 (+) True XLOC_015856
TCONS_00031499 mRNA downstream 77311 45643122 ~ 45652375 (+) True XLOC_015857
TCONS_00031501 mRNA downstream 130932 45696743 ~ 45806367 (+) False XLOC_015858
TCONS_00031468 other upstream 640537 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031458 other upstream 1000719 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031447 other upstream 1211646 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031434 other upstream 2262131 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031429 other upstream 2566294 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031505 other downstream 723049 46288860 ~ 46288996 (+) True XLOC_015865
TCONS_00031509 other downstream 1546885 47112696 ~ 47113654 (+) True XLOC_015873
TCONS_00031510 other downstream 1583122 47148933 ~ 47149569 (+) True XLOC_015874
TCONS_00031532 other downstream 2376380 47942191 ~ 47943492 (+) True XLOC_015885
TCONS_00031539 other downstream 2697939 48263750 ~ 48264602 (+) True XLOC_015891

Expression Profile

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