RNA id: TCONS_00031503


Basic Information

Item Value
RNA id TCONS_00031503
length 3238
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_015860
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 46009507 ~ 46012744 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgcacacacctgaactcaatccagttaacgacccacgctccTATATAAGCCACTCTCAAACTCCAGTTCtctgcgaagtcttgtttagccccggccagcatttctgagtgttctatcctgcctgatctcccgtttaccacttcagcccgttcctcgactctgctctgtcttctgcctgcccttgacctaaagcctgtattacggactctgaaccacgttgcctgcccttgactcaagcctggtaatcactctgcctctgttatctgctaatcatcgttgagttgtatgttgtatgttcgcacaaccgtgcgaggtgttgatgtttaagtgtgacttaaataaacactgcaaaatggatccctccgtgtcagtctccccgttacagaagacttcgcccaacatggaTCCCGCAGTCATGCAGGCCCTGTCCCACGAAGTCGCAACTCAAGCTCAGGTACTATCAACACATCAGCAACAGTTATCACATCTAACCCAGCTGACCGATGAATTAGTTAAGGCATTGCAAGATCTTCGAGTTGCTTCCACAGTGCAACTTACCACCAATTACACTCCGAGCCAACATCCTGTTACACCGCTCCAGACCTTCTCCGGCGTTCGTTTGGCATTTCCCgacaagttctcaggtaacccagccAAATGCAAAGGCTTTTTACTACAGTGTAAACTCTTTATCGCTCAACAGCCCCATCTGTTTACTGATGAAAAGAGTAAAATTGCCTTTGTGTGCTCCCTGCTCACGGGAAAAGCTTTAGATTGGGCTACTGCGCTCTGGCCAGACAATGCTCCAATTTTCCCCTcatttaatgactttctcaaacgtttttgtACGGTTTTCGACCATCCTGAAGGAGGTCGTAATGCTGGCGAGGAGCTTTTGTGTGTCCAGCAGAGAAATCAACCTGCAGCCGAATTCGCTCTACATTTCCGCACGCTAGCTGCGCAGACTGGCTGGGCTGACGGTCCTCTAAAGACACTCTACAGAAAAGCTCTGAACCCAGAACTGCAGACTGAGATGGCATGCCGTGATGAGGGAAAATCACTGGATCAGTTCATTGAACTTTCAATCAGGTTGGATAATTTACTTCGAGTTAGAAGACCCCTACAGTCTGTTTTTCCCTGTCCTGTAACCCCTGAAGACCCCTCAGTTCCAAGTTCCcctgaacccatgcaactgggaGGAACCCGATTAACCCCTGAGGAACGTGAAAGAAGATTGTATGATCATTTATGCCTGTATTGTGGTCTTTTGGGTCATACCAAGTTCCGGTGTCCCAATAAACCTCCACCTAAGACAGTTTCGGTGAGTGCAACCAATTTACCCTCCACCTCCAATAACCATCTGAGTTTACCCGTCTGTCTGAATTATGGTGATGTAAGGATTCAGACTCGAGCTTTGGTTGATTCGGGAGCTGCTGGCAATTTTATTGACCACACGTTTGCGAGAAACCACTCCATCCCTCTTACCACCTGTGACTCTTCCCTAGCCATCACAGCTATAGACGGACGCCCCCTGGGGGAAGGAAACATTAAACTCCGTACCCAACCACTCTCGGTTCAAACTGCCTCTCACCATGAAGAAAAACTCTCCTTCCTAGTAATTGACTCTCCTCAGCATACCATTGTCTTCGGATTGCCCTGGCTGCAGGCCCATGACCCCCAGATCTCCTGGAAGACTGGTGGGATTATCAAATGGAGTAAGAACTGCATTAACCAATGTCTTAAATCTGTCACCTCTGTCCAACTCAAGACCAGAATCGCCTGTCCTGAAAACCCTGAGCCCAGTCAGATCCCCGAAACTTACCAAGATCTCAATGAAACCTTTAACAGACAGAAAGCCACTAAACTCCCTCCCCATCGTGAGGATAATCATGCTATGGAGTTACTACCAGGCATACCGCCTCCTCGTAGAAGGATCTTTCCACTCTCTCAGCCTGAGACCGAAGCCAGGAATACTTGCGTCACGGAAAAGTTGGAGAAGGGCTCTGTTCAAACATCCGCATCACCTGCTCCAGCTAACCTAACCGTCCCCTCCACAGCCAAGTCGTTTGTCGTCGAGAGTGATACCTCCGACATGGGCACCGGCGCTAAACGTTCCCAGAGACCCCCGGCAACTAACAAACTCCACCCCTATACCTTTCATTCTCCCAAACGTAACCCTTCCAAGAGAAACGATGATGTCGAGCAAATTCGGAAGAAACCCCTGGAAGCACCTCGTCGTCCTGGTCCCATGTACTTCCCCGGACAGTGGGTGTGGCTATCAACCCGAGACCTCCACTTGAGACTTCCTTGCAAGAAATTcagccccaggtacgtgggtccttttCAAATTGAGAAACAGATTACTCCTGTATCCTTCCGACTGACACTACCTAACCACTACCGTATCTCTCccattttccatgtctccctgctcaagcctgctgttggtccagctgaggtggatagggaggtggcagccggtgaacagggtctcCCACCTATCATGATCGACGGAGAAGAGGCTTACCGGATCCATGAGATCCTGAGATCTAGACGCCGGGGCAGACAACTACAGTACCTCGTcgactgggaggggtacggtccgGAGAAAAGATCTTGGATCAAACGTAAGGATATTCTCGATCCAAATCTGGTGAATGAGTTTCACTTGCAACATCCGGaaatgccggcccctcgcccccgtggaagaccccggcgtcgcaATTcttctcacttcaggagccgttcgttggaggggggctctgtcaccgactcggtcccagtcattcccctcgctggccagcagaggccgccatccccggacttctaagcattacatcatccacctagactgatcgtgcacacacctgaactcaatccagttaacgacccacgctccTATATAAGCCACTCTCAAACTCCAGTTCtctgcgaagtcttgtttagccccggccagcatttctgagcgttctatcctgcctgatctcccgtttaccacttcagcccgttcctcgactctgctctgtcttctgcctgcccttgacctaaagcctgtattacggactctgaaccacgttGCCTGCCTttgactcaagcctggtaatcactctgcctctgttatctgctaatcatcgttgagttgtatgttgtatgttcgcacaaccgtgcgaggtgttgatgtttaagtgtgacttaaataaacactgcaaaatggatccctccgtgtcagtctccccgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000193596

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033298 lncRNA upstream 540922 45468067 ~ 45468585 (+) True XLOC_015847
TCONS_00033297 lncRNA upstream 547533 45461133 ~ 45461974 (+) True XLOC_015846
TCONS_00033657 lncRNA upstream 575879 45432582 ~ 45433628 (+) True XLOC_015843
TCONS_00033656 lncRNA upstream 1020214 44984483 ~ 44989293 (+) True XLOC_015832
TCONS_00033655 lncRNA upstream 1608839 44395314 ~ 44400668 (+) True XLOC_015823
TCONS_00033658 lncRNA downstream 44062 46056806 ~ 46060001 (+) True XLOC_015862
TCONS_00033660 lncRNA downstream 181583 46194327 ~ 46332513 (+) False XLOC_015863
TCONS_00033659 lncRNA downstream 181583 46194327 ~ 46332513 (+) True XLOC_015863
TCONS_00033661 lncRNA downstream 267958 46280702 ~ 46317783 (+) False XLOC_015864
TCONS_00033662 lncRNA downstream 268084 46280828 ~ 46312806 (+) True XLOC_015864
TCONS_00031502 mRNA upstream 88304 45918939 ~ 45921203 (+) True XLOC_015859
TCONS_00031501 mRNA upstream 203140 45696743 ~ 45806367 (+) False XLOC_015858
TCONS_00031500 mRNA upstream 203140 45696743 ~ 45806367 (+) True XLOC_015858
TCONS_00031499 mRNA upstream 357132 45643122 ~ 45652375 (+) True XLOC_015857
TCONS_00031498 mRNA upstream 370348 45636034 ~ 45639159 (+) True XLOC_015856
TCONS_00031504 mRNA downstream 19934 46032678 ~ 46184590 (+) True XLOC_015861
TCONS_00031506 mRNA downstream 398335 46411079 ~ 46489869 (+) True XLOC_015866
TCONS_00031507 mRNA downstream 577054 46589798 ~ 46728027 (+) False XLOC_015867
TCONS_00031508 mRNA downstream 577076 46589820 ~ 46728000 (+) True XLOC_015867
TCONS_00031511 mRNA downstream 1236435 47249179 ~ 47249425 (+) True XLOC_015875
TCONS_00031495 other upstream 443696 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031468 other upstream 1084831 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031458 other upstream 1445013 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031447 other upstream 1655940 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031434 other upstream 2706425 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031505 other downstream 276116 46288860 ~ 46288996 (+) True XLOC_015865
TCONS_00031509 other downstream 1099952 47112696 ~ 47113654 (+) True XLOC_015873
TCONS_00031510 other downstream 1136189 47148933 ~ 47149569 (+) True XLOC_015874
TCONS_00031532 other downstream 1929447 47942191 ~ 47943492 (+) True XLOC_015885
TCONS_00031539 other downstream 2251006 48263750 ~ 48264602 (+) True XLOC_015891

Expression Profile

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